Mya arenaria (softshell): 128213068
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Entry
128213068 CDS
T09995
Name
(RefSeq) transcription factor Sox-17-alpha-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
maea
Mya arenaria (softshell)
Pathway
maea04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
128213068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
maea03000
]
128213068
Transcription factors [BR:
maea03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128213068
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
128213068
NCBI-ProteinID:
XP_052774544
LinkDB
All DBs
Position
13:61952965..61965105
Genome browser
AA seq
412 aa
AA seq
DB search
MNTSTLFSSYSASYPQTNTSYLTTNNACQYSHWNQNMTFTPTLCDATGAGMRGIPKKEQR
IRRPMNAFMVWAKKERKSMAEQNPDVHNADLSKMLGDKWKQLNADEKKIYTDEAERLRQE
HMKLYPDYKYRPRRRKTSKKSESAANQNSGAAYIPAKPYQVPNAHTRRSNSFCYEDMRQP
KYGNSGLEYPYSSSVPVTAVGYGGYGINVPYSPRTTSTPESNLSSSPETFAHDQYEMSEG
AYYSSCCSYEAQVNAAGSISLKSIPVPICPEYQRDNGNTHARVAMEVRNTNERATKGATN
GKGSDSHIMSTAILSDIDGLKPEEFDQYLPTIKLKADFNSNVVTSNHNNDGANSGQGKTY
ERCHVWCSQGAAVKIESTENDDMDDTKPNPTGVFAFEYDDAQPFINAITTDK
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgaacacaagtacacttttcagcagttactctgcatcgtatccgcagacgaacacatct
tacctaactaccaacaacgcgtgtcaatattctcattggaatcaaaacatgacgtttaca
ccgacgttatgtgacgctaccggagccgggatgcgagggattccgaaaaaagagcaacgt
attcgacgtccgatgaacgctttcatggtttgggccaaaaaggagcggaaatcgatggcg
gagcagaatcccgatgtccataatgcggatctcagcaaaatgctcggtgacaaatggaag
cagctaaacgccgatgaaaagaagatctataccgacgaggctgagcgactccgacaggag
cacatgaagctctatccagactataaataccgaccacgacgacggaaaacatcgaagaag
tccgaaagtgctgctaatcaaaactccggtgccgcctacatcccagccaaaccatatcaa
gtcccgaacgcccacactcggcgctcgaacagtttttgttatgaggacatgaggcaaccg
aaatatggaaacagcgggttagagtacccatacagctcgagcgtccctgtaaccgctgtt
ggctacggtggctacggtattaacgtgccgtacagcccacggacaacatctaccccagag
tcgaatctttcaagcagcccagagacatttgcacatgaccagtacgagatgtctgagggt
gcgtactatagttcatgctgctcgtatgaggcgcaagtaaatgctgctggaagtatttcc
ctgaaaagtataccggtccccatatgccccgagtaccagcgagataacggcaatacgcat
gcacgtgttgcaatggaagtcagaaatactaatgaaagggccacgaaaggagctaccaat
ggcaaaggctctgatagccatataatgtcaacagccattttgagcgatattgatggcctg
aaacccgaggaatttgatcaatatcttcccactataaaattaaaggcggactttaattca
aatgtggttacgagcaaccacaacaacgatggggcgaactccggacaggggaagacgtat
gaacgttgccatgtgtggtgttctcagggcgctgcagtgaaaattgaaagcacagaaaat
gatgacatggatgatactaagcccaacccgacaggagtgtttgcctttgaatatgacgac
gctcagcctttcattaatgctataacaactgataaataa
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