Mya arenaria (softshell): 128213879
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Entry
128213879 CDS
T09995
Name
(RefSeq) DNA excision repair protein ERCC-8-like isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
maea
Mya arenaria (softshell)
Pathway
maea03420
Nucleotide excision repair
maea04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
128213879
09124 Replication and repair
03420 Nucleotide excision repair
128213879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
maea04121
]
128213879
03400 DNA repair and recombination proteins [BR:
maea03400
]
128213879
Ubiquitin system [BR:
maea04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
128213879
DNA repair and recombination proteins [BR:
maea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
128213879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR55
Beta-prop_EML
Beta-prop_TEP1_C
WDR90_beta-prop_4th
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
WD_LRWD1
ANAPC4_WD40
Beta-prop_RIG_1st
Beta-prop_RSE1_2nd
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
128213879
NCBI-ProteinID:
XP_052775908
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All DBs
Position
13:complement(6109665..6114350)
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AA seq
447 aa
AA seq
DB search
MLKLIERRELGVIDPLSFNRAETARRVYNLQLSDHKDVEKVFSGTVNTLDLELVEKRYLL
AGGGDGFVVIYDVCCPPGPERHTFPSVGTVALNNRHRHKFSVETVLWYPLDTGMFTSSGA
DCMLKVWDTNRLKPADEYQFSGIVNCHHMSPIATRHCLVAVATNSSTVKLVDLKSGSSSH
SLKGHDTSVFVVKFSPYNEFILASGSGDRKILLWDIRNAKGSLLQFDQYNGRQPKDVLEN
NCALSHNNAVNGLQFSSDGIHIVSCSTDNAVRLWNTSTGKNVGVDYGAISNRAKKCVQFA
VSDGCSQDLVFIPNDTRRSVDALNMVTGKREYSLTGHYSYVNCCLYHPDLNELYSGANDR
NILVWTPKTFSSQYRNVRKRRRERVEFKCTEKQPKRSTEKHDSKITVSSTAKSSISNGIS
AGLSGIETTGGANTALTADSWSSDEDT
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaattaattgaaaggcgtgaattaggtgtcatagatcccctgagctttaacagg
gctgaaactgcccggagagtttataatcttcaactttctgatcacaaagatgtagaaaag
gtgttttccgggactgtcaatacgcttgacttggagttggttgaaaaaagatacttgcta
gctggaggaggagatggatttgttgtgatctatgatgtgtgttgtccccctggcccagaa
agacacacctttcccagtgttggtacagtggcactgaataaccgccaccgccacaagttc
agtgtggagacagtgctctggtatccactagacacagggatgttcacctccagcggtgca
gattgtatgctcaaagtgtgggataccaacaggcttaagcctgcagatgagtaccagttc
agtggcattgtgaactgccaccacatgtctccaatagccacacgccactgtcttgttgct
gtggcaaccaacagttccacagtgaagctagtggacttgaaatctggttcatcatcacac
agtctgaagggccatgacacctcagtgtttgtcgtgaagttctctccatacaatgagttc
attctagccagtggaagtggtgaccggaagatattactatgggacatccggaatgcgaag
ggcagcctcctacagtttgaccagtacaatgggaggcaacccaaggacgtacttgaaaat
aactgtgccttgtcccacaacaatgctgtgaacggactgcagttctcatctgacgggatc
cacattgtctcgtgcagcacggacaacgcagtgaggttgtggaacacttctacagggaag
aatgtcggcgtggattatggggccatctcaaacagggccaagaaatgtgttcagtttgcc
gtgtccgatggttgttctcaggacttggtgtttattcccaacgatacaagacgtagtgtt
gatgcattgaatatggtcacaggaaaacgagaatactcgctgacaggacactactcctac
gtgaactgttgcctgtatcatccagacttgaatgaactgtactcaggggctaatgataga
aatatattggtatggactccgaaaacgttttctagtcagtacagaaatgttaggaaaaga
cggagggaaagagttgaatttaaatgcacagagaaacagccaaaaagatcaacagaaaaa
catgacagtaaaataacagtttcaagtactgccaagtcgtctatatctaatggaattagt
gcagggttgtccggtatagagacgactggcggggccaacacagcattgacggcggacagc
tggagcagcgatgaggatacttga
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