Mya arenaria (softshell): 128214236
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Entry
128214236 CDS
T09995
Name
(RefSeq) exosome complex component RRP4-like
KO
K03679
exosome complex component RRP4
Organism
maea
Mya arenaria (softshell)
Pathway
maea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128214236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128214236
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
128214236
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
128214236
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GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
128214236
NCBI-ProteinID:
XP_052776558
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All DBs
Position
13:19959601..19966944
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AA seq
293 aa
AA seq
DB search
MAVDIRISTARNYAKPDHSESIANLVTPGDVITSDQGFMRGHGTFMEEGKHHASVAGIVQ
RVNKLICVTPIKTRYNGEVGDIIVGRILEVGMKRWKVDTHSKLDSLLMLSSVNLPGGELR
RRSEEDEKLMRHYLKEGDLISAEVQSVFSDGSLSLHTRSLKYGKLGQGCLYQVSPSLIKR
RKTHFHNLPCGATVILGNNGYVWLSPTEGEVSEQTGGYEQHMEPVSRADREVIARLGNCV
LALAEHKMMLFDTSILYTYEASLKYPVKDIMKPELMTDIIDLARQRLEREGAT
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgatatccgaatttctaccgctagaaattatgcaaaaccagaccattccgaa
agtattgctaatcttgttacgcctggtgatgttataacgtcagatcaagggtttatgaga
ggacatggcacatttatggaggaaggcaaacaccatgcctcggttgctggaattgtgcag
cgagtcaacaaactcatctgtgtcacccctataaagaccagatacaatggtgaggtaggt
gacatcattgtgggccggatcctggaggtcgggatgaagcgatggaaggtggacactcac
tcaaagctagactccctcctcatgctgtcctctgtcaatctgcctggcggagaactgcgg
cggagatctgaggaggacgagaaactcatgagacattacctaaaggagggtgacctcatc
agtgctgaggtacagtctgtgttctccgatggctccttgtccctccacacgcgatctctc
aagtatggaaagctgggccagggatgcctgtaccaggtgtcgccatctctgatcaagcga
cgtaagacccatttccacaacctgccatgtggggccacagtaatcctgggtaacaacgga
tatgtttggctctcccctacagagggcgaggtcagcgaacagaccggtggatatgaacaa
catatggagcctgtttcccgtgcggaccgtgaagtaatagctcggctcggaaactgtgtg
ctagctcttgctgaacacaagatgatgttgtttgacacaagcattctctacacttacgag
gcttcactcaagtatccagtgaaggacatcatgaagccagagctgatgacagacatcata
gatctggctcgacagaggcttgagagggagggagctacctga
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