Mya arenaria (softshell): 128214610
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Entry
128214610 CDS
T09995
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128214610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
maea03041
]
128214610
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128214610
Spliceosome [BR:
maea03041
]
Complex A
U2 snRNP components
U2 related factors
128214610
Complex B
128214610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
KH-I_KHDC4-BBP
CdAMP_rec
DUF3928
Motif
Other DBs
NCBI-GeneID:
128214610
NCBI-ProteinID:
XP_052777138
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All DBs
Position
2:36043033..36058872
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AA seq
700 aa
AA seq
DB search
MAAILSVPIWTEETEELRLELEGIKVRGKNCPKPIREWAEVGVSKRVLECLKRNHFDKPT
PIQSQAIPAIMSGRDLIGIAKTGSGKTIAFLLPLFRHILDQPELDEEDGPIGVVLTPTRE
LAMQITTDARKFTKALGLSVVCVYGGTGISEQIAELKRGCEIIVCTPGRMIDMLAANNGR
VTNLRRCTYVILDEADRMFDMGFEPQVNRIIDNIRPDRQTVMFSATFPRQMEGLARKXLN
KPIEVQVGGRSVVCTDVEQHVVVLEEEQKFFKLLELLGQYQEKGGVIVFVDKQENADDVM
KDLMKHSYPCMSLHGGIDQYDRGSIIQDFKNGDNRLLVATSIAARGLDVKHLILVVNYDC
PNHYEDYVHRCGRTGRAGNKGTAYTFITPEQVRYAGDIIKALELSESTVPENLQKWWDEY
KKQAESEGIKIKSSSGFHGKGFKFDESEAQLSSERKKLQKAALGLVDSDDDDPNEDIEQQ
IEDMFASKKRVTDVSKSQVNVPFQPSGMGSSTNKMGANNQMKLEMAKRLAAKINFSKNLG
QEAQDITQQATKAMFQDGLVAPQVASKTIAEQMAEKINAKLGYTPQVDEDKEADQDTFKR
YEEELEINDFPQTARWKVTSKEALAQICEYSEAGITVRGTYFPAGKQPKEEERKLYLAIE
ATNELAIQKAKKEVTRLIKEELIRLQNSYQPINRARYKVV
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcagccattttgtctgtccccatatggacagaggagacagaagagctgcgcttagaa
ctggaggggatcaaggtccgggggaaaaactgcccgaaacccatccgtgagtgggcagag
gtcggcgttagcaaacgggtccttgagtgtttgaagaggaaccattttgacaagccaaca
ccgatccagtcccaggctatcccagccatcatgtcaggacgggaccttatcggaatcgcg
aaaacaggaagtgggaaaaccatcgcgtttcttctgccgctgttcagacacattctcgac
cagcctgaactggatgaggaagatgggccgataggtgtggtgttgacgccaacacgtgag
ctcgccatgcagataacaacagacgctagaaagtttacgaaggcgcttggtctgagtgtt
gtctgtgtgtacggtggtacaggaatctccgagcagattgcagagttgaagcggggatgt
gaaatcattgtctgcaccccgggccgtatgattgacatgcttgcagcaaataatgggcgt
gttacgaacttgcggcggtgtacgtatgttatattggatgaggctgatagaatgtttgac
atgggatttgagcctcaggttaatcgtataattgacaatatcagacctgacagacagaca
gtgatgttttcggcaacattcccgcgacaaatggaggggctggcacgaaaantcctcaac
aaaccaattgaggtgcaagtcgggggtcgcagtgttgtttgcacggatgtcgaacaacat
gtggttgtccttgaagaagaacagaagtttttcaagctgctggagcttctgggccagtac
caggagaagggcggggtgatcgtatttgttgacaagcaagaaaacgcggatgatgtgatg
aaagacctcatgaagcattcgtacccctgcatgtccctacacgggggtattgaccagtat
gaccgcgggagtatcatacaggactttaagaatggggataatagactgctggtggcaacc
tctatagcggcgcgagggcttgatgttaaacacttgatcctcgtggtgaattatgattgt
ccaaaccactatgaagactatgttcacagatgtgggcgtacaggtcgagcaggtaataag
ggcactgcttacacgttcattacacctgaacaagtccgttatgctggagacatcattaag
gccctagagttgtcagagtccactgtgccagaaaacctacagaaatggtgggacgagtat
aaaaaacaggcagagtcggagggtataaagataaagagcagcagtggtttccatggtaaa
ggtttcaagtttgacgaatcagaagcccagctctccagtgagaggaagaaactacagaaa
gcagctcttgggctcgtagattcggacgatgatgatccaaatgaggatattgaacagcag
atagaagacatgtttgctagtaagaagagagtcacagatgtttccaagtctcaggtcaac
gtgcctttccagcctagtggtatgggctccagcacaaacaagatgggcgcaaataaccag
atgaagctggagatggccaagcgtctggcagccaaaatcaacttcagcaagaatcttggt
caggaggcacaggacatcacgcagcaggctaccaaggctatgtttcaggatggactggtg
gcacctcaagtggcatcaaagacaatcgcagagcagatggctgagaagatcaatgcgaaa
cttggctacactccacaggttgacgaggacaaggaagcagaccaggacacattcaagaga
tacgaggaagagctcgagattaacgacttcccacaaactgctcgatggaaggtcacatcc
aaggaggcgttggctcagatatgtgagtactctgaggctggtatcacagtgcgcggtaca
tactttcctgcaggaaaacagcccaaagaagaagagagaaaactctacctggccatcgag
gctacaaatgagctcgccattcagaaagcgaagaaagaggtcacacgccttataaaggag
gaactcattagattgcaaaactcctaccagccaatcaacagagctcgatacaaagttgtc
tga
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