Mya arenaria (softshell): 128216973
Help
Entry
128216973 CDS
T09995
Name
(RefSeq) uncharacterized protein LOC128216973
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
maea03041
]
128216973
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128216973
Spliceosome [BR:
maea03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
128216973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
AAA_30
AAA_22
AAA_19
Motif
Other DBs
NCBI-GeneID:
128216973
NCBI-ProteinID:
XP_052779698
LinkDB
All DBs
Position
14:60380817..60397868
Genome browser
AA seq
1240 aa
AA seq
DB search
MASVAHKFQEKARTGDVILSEAVTFDGLLLSKQVLNGLKNSGFERPSPIQLKAIPLGRCG
LDLIVQAKSGTGKTCVFSVIALESVRVDTSSTQVLVLAPTREIAVQIWEVINSIGSATSG
LLCHTFIGGLPLQEDRIKLKKCHIAVGTPGRVKQLIEGGVLRTDSIRLFVLDEADKLLEE
SFQEQINWIYSTLPENKQMLALSATYPEYLANHLTAYMRNPTFLRLNITDPALLGIRQFY
TTVPYHPVPHAVFEEKTKVLIHLLSSVSFQQCLVFSNLQTRAQTLADVLNSKGWPTACIA
GCLDQKDRNEAMARLKTYKCRILISTDLTSRGIDADKVNMVINLDVPKDHETYLHRIGRA
GRFGSFGIAVSLISDGQEKLNLDSIQKRCNTQINTLPDPLPSDLAHPDGPVYLDDVVSAE
IINTDLTNYKIQTSSGKLNDTDTTHSMNSASPRKLNVTELRMVLASPEKHVSGRPDKQSQ
NGNEGETEEGLDDDDDDDEFEKDGTYENGLITTNGDICEPYVEDENDEILNAETDIKLHF
EIVGDRSDKSSTLRCKEDAGKNETNDTKGMANDTERELIFDIKKTECLKETPVLSGVNRQ
KNDGASSSTGTKEQTVFFENKAVSFQNHSLTSVIRERLNNTCSSMEKVRLTDIYKSNIGF
KSLRKSHTYSSAIESLLAFRNDVSGVSSAVAKADSCIIPRCKETHPELAKLKENITEIQD
TLNDGFSGSRSETVRLLAKNNDIKEGEDSGATHFDGPNQMKVAVEEQIEITKNSCQKSRI
GIEENDSNQTHNERHVEKTQQSLEKASKENVMIDNIVSTGKFRELTVEECYKKKVHLLET
KQEIGPEISSTKNFMSKENRLRSNGMQKKEQKPRRQKQGYHNKFAIGYLLQQQTMEEKDD
VEDEVSADETLKDSEENIEGGSKGSGSTGSAANLIDKHTRIVEDITPDLSPEKEICPLKR
NEFAETLSSFKQSLDEVKGIQDLKSTELVAETKGCFHQKDDDLLTSSKEPNDETNGVFKL
NDDDLYTSSDDSSDDSSDDSMSSSDESDSEREYRNEIKSLMSKRQNSTSRKSQSYTDNSQ
HDDKCYSKVSVNGKSFVLTKENKKTQPKESQIGNHLTNGGNYLCRAKRETTRDSYQEKME
TWYTQFQEWQKLYQTPDPNITARSHSHFDYRQNPYYYQHHHHQFYNPQMQFYSPYQSGRG
GGAFHHQSDNWKGASFNDQNQYIKQMCRQPKPVVKKKKEM
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtgttgctcacaaattccaggaaaaggctagaactggtgatgttatattgtca
gaagcagtaacatttgatggtttattattgtctaaacaagtgctgaatggattgaaaaat
tctggttttgaacgtccctcaccaatccagttgaaagcaattcctcttggaagatgtggc
ctagacctgattgttcaagccaaatcagggactgggaagacgtgtgtgttctcggttata
gccctggagagtgtcagggttgatacatcatctacacaggtactggtgctagccccaact
cgagagatagccgttcagatttgggaggttatcaacagcattgggagtgcaacttcaggt
ctgttgtgccatacattcatcggtgggctgcctctgcaagaagacaggatcaagctgaag
aaatgccacatagctgtgggtacacctggtcgtgtaaagcagttgattgaagggggagta
ctacggacagacagtattcgtctgtttgttcttgatgaggctgacaaactgctggaagag
agcttccaggaacaaatcaattggatctattccaccctaccagagaacaagcagatgcta
gccctgtctgccacctatccggaatatctggccaatcatctgacagcgtacatgagaaac
cccacatttcttcggctgaacatcactgaccctgccttactcggtattcgtcagttctat
accactgtgccctaccaccccgtgcctcatgccgtgtttgaggagaaaaccaaagttctc
atccatcttctgtcatcagtgagcttccaacagtgtttagtcttttctaaccttcagacc
agggcgcagacattagctgatgtgttaaacagtaaaggctggcctacagcgtgtatagct
ggctgcttggatcagaaggaccggaacgaggcaatggccagactcaagacatacaagtgt
aggatcctcatctcgactgaccttacatctcggggtatagacgcagacaaagtgaacatg
gtgatcaacctggacgttcctaaggaccatgagacctaccttcacaggattggacgagcg
gggcgatttggttcgtttggtattgctgtcagccttatcagtgacggccaggaaaagctg
aacttggactccatacagaaacgctgtaacacccagattaacaccttaccagatcccttg
ccaagtgatcttgctcaccctgatggccctgtgtatctggatgacgttgtctctgctgaa
atcatcaacactgaccttacaaattacaagattcagacctcttctgggaaattaaatgat
actgatacaacacatagcatgaattcggccagccctagaaagctaaatgttactgaactt
agaatggttctagctagccctgagaaacatgtgagtggtagacctgataagcaaagccaa
aatggaaatgagggagaaactgaagaaggattggatgatgatgatgatgatgatgagttt
gaaaaagatggaacttatgaaaatggtttaattacaacaaatggggacatatgtgaacct
tatgttgaagatgaaaatgacgagattttaaatgctgaaactgacattaagttacatttt
gagattgtgggtgatagatcagataaaagctcaactttaagatgtaaagaagatgcagga
aagaatgaaactaatgatacaaagggaatggcaaatgacacagaaagagaattgatcttt
gacatcaaaaaaactgaatgtcttaaagaaacgccagtgctaagtggtgttaatagacaa
aaaaatgatggggctagtagctctactggaacaaaagaacaaacagtcttttttgaaaac
aaagcagtctcctttcagaaccattcattaacatctgtgattagagagagactgaacaac
acatgttcttctatggaaaaggttagattgacagatatatataagtcaaacataggtttt
aaatcacttagaaagtcgcatacttattcatctgcaatagaatctttgttagcatttaga
aatgacgtgtctggagtgagttcagctgttgcaaaagcggattcctgtatcattccgaga
tgtaaagaaacccacccagagttggcaaagctgaaagaaaacattactgaaatacaagat
acattaaatgatggattttcaggtagcaggtcagaaactgtgagactccttgctaagaac
aatgatataaaagagggtgaagactcaggcgctactcactttgatggacccaaccaaatg
aaggttgcagtggaggagcaaatagagataacaaagaacagttgtcaaaaatctaggata
ggcattgaagagaatgattcgaaccaaacccataatgagagacatgttgaaaaaacacag
caaagtttggaaaaagctagtaaagaaaatgtgatgatagataatattgttagcactggt
aaatttcgggaattgacagtagaagaatgttacaagaaaaaagtacatttgctagaaacc
aaacaagaaataggtcctgaaatatcttcaacaaagaattttatgtcaaaggaaaacaga
ctgcgttctaatggaatgcagaaaaaagaacagaagccaaggagacaaaagcaaggctac
cataacaaatttgccatcggttatctgcttcaacagcaaacaatggaagagaaggacgat
gttgaagatgaagtaagtgctgatgagacacttaaagattctgaagaaaatatagaaggt
ggttctaaaggctcaggtagtacagggtcagcagcaaatttaatagataagcatactaga
atagttgaagatataacaccagatttatcacctgagaaagaaatttgtccattaaaaaga
aatgaatttgcagaaactctgtcaagctttaaacaaagtctggatgaagttaaaggtatc
caagacttgaagagtactgagctagttgctgaaacaaagggttgctttcaccaaaaagat
gatgatttgttaactagctctaaagagcctaatgacgaaacaaatggtgttttcaagctc
aacgatgatgatttatatactagctctgatgattcaagtgatgattcaagtgacgattca
atgtcttcaagtgatgaatctgattctgaaagggaatacagaaatgaaatcaaatcatta
atgtccaagagacaaaacagcacctcaagaaagtctcaatcatacacggacaacagccag
catgatgacaagtgttattcaaaagtatctgttaatggtaagtcatttgtactaacaaaa
gaaaacaagaaaactcagcctaaggaaagtcaaattggaaaccatctcacaaatggtggt
aattatttatgcagggcaaaaagagaaacaacaagggattcttatcaggagaaaatggaa
acttggtatacgcaatttcaagagtggcaaaagttgtatcaaacacctgacccgaacatc
acagccagaagtcattctcattttgattacagacaaaatccatactattatcaacatcat
caccatcaattctataatccccagatgcagttttatagcccatatcagagtggtcgtggt
ggaggtgcatttcaccatcagtcagataactggaaaggtgcaagtttcaatgatcagaat
cagtatataaagcaaatgtgtagacaacccaagcctgtggtcaagaaaaagaaagaaatg
tga
DBGET
integrated database retrieval system
