Mya arenaria (softshell): 128219704
Help
Entry
128219704 CDS
T09995
Name
(RefSeq) collagen alpha-2(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
maea
Mya arenaria (softshell)
Pathway
maea04512
ECM-receptor interaction
maea04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128219704
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128219704
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
maea04147
]
128219704
00536 Glycosaminoglycan binding proteins [BR:
maea00536
]
128219704
Exosome [BR:
maea04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128219704
Glycosaminoglycan binding proteins [BR:
maea00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128219704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128219704
NCBI-ProteinID:
XP_052783590
LinkDB
All DBs
Position
15:complement(13384622..13428089)
Genome browser
AA seq
1764 aa
AA seq
DB search
MELRIICLAVAISSISSLVQGQFRNRTDPECGGCTTGNGCRCVGEKGSRGFPGSPGPQGP
QGNTGFEGPEGLVGAKGLKGEPGVPGITGPKGDRGKMGMPGFPGISGIPGLQGPPGPRGI
QGLDGCNGTQGEPGVPGLPGTRGFDGQPGRDGLMGMKGEPAQAGEGIKGSKGESGLDGQP
GVPGRNGQDGTPGLPGEPGPRGYKGDKGDAGLTGPKGAMGIVFKPEKGDKGVRGPVGPPG
PPGTTKLPFTGNESYTGPQGDKGPKGEKGEPGYEGERGYPGLDGLPGRIGNPGMNGEKGV
PGIAGPRGKQGLPGVPGFMGPKGDRGMDGLPGLSGIPGMKGERGFEGEKGMVGPRGPQGP
PGGPGGGDGRPGEPGPPGPRGPNGEDGLPGLPGQRGESGPEGLRGGPGVPGPPGQQGLDG
PRGDKGDQGLQGFPGIDGLPGQNGYPGPKGEYGPKGEPGLSIPGEPGRGGESGRDGLPGF
KGDRGPRGLPGLPGNSSVGRPGLPGLKGEIGPPGLQGLDGRPGLPGRDGTKGDRGGLCNQ
CQDGIKGEKGTPGLLGRPGLQGERGNEGYKGEKGEPGFDGNPGLQGPMGSTGLKGDRGLD
GLPGPAGEDASIPNEYFQPPKGEPGENGLNGLPGMKGEPGPQGPRGLEGLPGLQGAKGDS
GGDGVPGRPGERGQSGNPGLKGERGFGMNGLPGDRGDPGQPGLPGLPGMKGDKGVPGETV
IVGKGAKGDRGPAGPPGIPGMDGLPGVDGESGNPGLPGLDGLPGRPGNDGLDGRPGESGP
RGLTGPRGDKGESGPGGLPGFDGPAGEPGVPGLSGLPGMKGEPGTPGNAVIGPKGDAGID
GVNGVPGLPGRKGERGMPGLDGLPGQKGESGLDGVPGVNGLPGMKGEAGPEGPRGLPGLS
GEPGLPGIPGDVGGKGEPGLSGVPGLSGARGQKGESGLPGMDGLPGLQGESGPRGPNGDD
GLPGLPGPKGDMGVIGFPGEPGRDGLPGLQGIGGPKGERGFPGVNGEPGLNGLPGGKGES
GVPGLPGLDGTPGQPGRGGQKGEAGPNGLDGRPGPRGLDGVPGLTGMKGDSGEPGFGQKG
EPGFPGEPGREGLDGIPGVAGQKGESGVPGFPGMKGERGFDGVPGTSGPSGLDGLPGMKG
APGLPGRPGEPGRQGEDGLPGLDGVAGFKGEDGLPGRSGLPGRDGEKGERGLTGPEGPSG
APGLPGLKGEPGLSGLPGLQGMKGQPGFPGEPGRDGEKGASGFPGANGEPGRAGEKGERG
FSGAPGRKGETGRDSVGQKGEPGLPGMPGLEGQRAEKGEPGLRGLDGIPGLKGEAGYPGE
GVPGIKGEAGFPGAEGRKGERGLPGVDGTPGLNGRKGDRGEPGLPGPQGEDGLPGLAGEK
GDEGIPGMPGLEGMKGDSGLPGLAGPGGRKGEPGIPGVEGPKGNRGYNGEKGETGPRGPM
WEPPQNYQMKGDRGEPGLNGLPGPAGEPGPQGENGLPGRPGLSGPQGDIGVPGFPGSKGD
TGDRGFNGRPGQDGLDGPKGLPGLPGLPGNPGYIPPVGFLMTKHSQSRNIPECPTGMNKM
WEGYSLLYVEGNERSHHQDLGWAGSCIRRFNTMPFLFCGTDNVCNYASRNDKSYWLSTNA
PMPMMPVADNDIPPYISRCVVCDAPSNVLAVHSQTLEIPECPIGWSGLWIGYSFVMHTGA
GPSGGGQALSSPGSCLEDFRATPFIECNGARGTCHFFANKFSFWLTTIAQNQQFRTPISE
TLKAGNLRSRVSRCQVCAKVVTGL
NT seq
5295 nt
NT seq
+upstream
nt +downstream
nt
atggagttgagaataatttgcctggccgtggccattagttccatatcaagtttagttcaa
gggcaattccgaaatcgtaccgatccagaatgtggcggttgtacgaccggtaatggatgc
agatgtgttggagaaaaaggatctcggggttttccgggttcccctgggccacagggaccc
cagggaaacacaggcttcgaagggccagagggactggttggagccaaggggttgaagggt
gaaccaggcgtgccaggaatcactggacccaagggagaccggggcaagatgggtatgcca
ggctttccgggtatcagcggtattcctggtttgcagggtcctcctggccccaggggtatt
caaggtcttgacggatgcaacggaacacagggagagcctggagtaccaggtttgcccgga
acccgtggctttgatggacagcctggacgagacggactcatgggaatgaaaggagagccc
gcccaggccggcgagggaatcaagggatcgaagggagaatccggacttgacggacagcct
ggagttcctggtcgtaacggacaggatggaacaccaggattaccaggagagccaggacct
cgcggatacaaaggagacaagggagatgcaggactgacgggcccgaaaggagccatgggt
atcgtcttcaaaccagagaagggagataagggagttcgcggtcccgtcggaccaccagga
cccccgggcacaaccaagctgccatttactggaaatgaatcttacaccgggccacaggga
gacaagggtccaaagggagagaagggcgagcctggttacgagggagaacgtggctaccca
ggactggatggtcttcccggtcggattggaaacccgggtatgaatggagagaagggtgtg
ccaggtattgctggccctaggggcaaacaaggtctgcccggtgttcctggattcatggga
cctaagggtgaccgtggtatggatggcttgcctggtttgtcaggtatcccaggtatgaaa
ggagagcgtggatttgagggtgaaaaaggcatggttggaccccgtggaccccagggaccc
cccggtggaccaggagggggtgacggacgcccaggagagccaggcccgcccggtcctcgt
ggacctaatggagaggacggcctgcccggattaccaggccaacgtggagagtctggccca
gaggggctccggggcggcccaggagtgcccggacctccaggacaacagggacttgacgga
cccagaggagataagggagaccaaggattacaaggatttcctggtattgatggtcttcct
ggccagaacggctaccctggacccaagggcgagtatggaccaaagggagagcccggattg
tcgattcctggagagccaggccggggtggggagtctggaagggatggattacctggcttt
aaaggcgacagaggaccgagaggtttgcccggtttacccggaaattcatctgttgggcgg
ccaggattacccggattaaagggagaaattggcccacccggattacaaggattggacggg
cgaccaggactgccgggacgagatggtaccaagggagacagaggaggattatgtaatcag
tgccaggatggaattaagggcgagaaaggaacacctggtctgcttggacgcccgggcttg
cagggtgaacgcggtaatgagggttacaagggtgaaaagggagagccagggtttgatggt
aacccagggttacagggtcccatgggatctacaggtttgaagggagatcgtggattggac
ggtttaccaggacctgcgggagaagatgccagtattcccaatgaatattttcagccacca
aagggggaaccaggagaaaatggcttgaacggtctgcctggaatgaagggagagcctggc
ccgcagggtccccgtggtttagaaggactgcctggactccagggtgctaagggagatagt
ggtggtgatggtgtacctggccgcccaggtgagagaggtcagtcaggaaaccccggactg
aaaggagagcgtggatttggaatgaatggactgccaggtgatcgaggtgacccaggacag
cccggtcttcctgggctcccaggaatgaagggtgacaagggtgtgccaggcgagacggtt
attgttggcaagggtgctaagggtgaccgtgggccagcaggaccccccggtatcccgggc
atggatggccttccaggtgttgacggagagtcaggaaaccccgggcttccaggacttgat
gggctgcctggacgaccagggaatgatgggcttgatggaaggccaggagagtcgggaccg
agaggattgactggaccacgtggtgacaagggagagagtgggcctgggggcttgcccggt
ttcgatggaccggcaggagagcccggagtaccaggactgtcaggacttcctggcatgaag
ggagagcctggaacacccggtaatgctgtcattggaccaaagggcgatgcaggtattgat
ggggtgaacggagttccaggactacccggacgaaagggagaaagaggtatgcccggtttg
gatggacttccaggtcagaagggagagtctggattagacggtgtgcccggagtgaacggt
ctgccaggaatgaagggagaagcaggaccagaaggcccacggggcttgcccggactttct
ggagaacctggcctgcccggaataccaggtgatgttggcggcaagggtgaacccggattg
tccggagttcctggattatcaggtgcccgtggtcaaaagggagagtctggattacctggg
atggatgggttgcccggattacagggagagtctggtccacggggccccaacggagatgat
ggactaccgggactgccaggtcctaagggagacatgggagtgatcggattccctggtgaa
ccaggacgtgatgggttaccagggttacaggggattgggggtccaaaaggtgaacgggga
ttcccgggtgttaacggcgaaccaggacttaatggactgccaggtggtaagggtgaatca
ggagtgcctggattacccggtctagatggaaccccgggtcagcccggacgtggaggtcag
aagggagaggctggaccaaacggattggacggcaggcccggacctagaggacttgatggt
gtgcccggactgacaggaatgaagggtgattcaggtgaaccaggattcggtcagaagggt
gaaccaggtttcccaggggaaccaggaagagagggattggatggcattcctggagtagca
ggacagaagggtgaatcaggagtgccaggattcccaggaatgaagggagaaaggggattc
gatggagtgccaggcaccagtgggccatcagggctggatggacttcccggcatgaaagga
gcaccaggattacccggccggccaggagagcccggacggcagggagaagatggattacct
ggccttgatggtgtggccggatttaagggagaggatggattacctggacgatctggattg
cctggacgggatggagagaagggagaacgtggcttgaccgggcccgagggaccttcagga
gccccaggactgccgggattgaagggagagcccggattgtcaggattgcctgggctacag
ggaatgaagggacagcctggtttcccaggggagcccggaagggatggagaaaagggtgca
tcaggttttccaggtgccaacggagagcctgggcgtgcaggagaaaagggcgaaagagga
ttttctggagcccctggtcgtaagggagaaaccggtcgtgatagtgtgggccagaaggga
gagccaggactgcctggaatgcctggattggagggtcaacgtgcagagaagggtgaacca
ggtctgcgtggtttggacggaattcctggactgaagggagaggctggttaccccggtgag
ggtgttcctggaatcaagggtgaagccggattccccggagctgagggtcgcaaaggtgaa
cgcggtctcccaggtgtggatggaacaccaggtttaaatggacgcaagggtgaccgtgga
gagcctggattgcctggccctcagggagaagatggactgccaggacttgccggagaaaaa
ggggacgagggaattccagggatgccaggactggagggtatgaagggtgactctgggctt
ccgggcttggctggaccgggaggacgcaagggagagcctggaatacctggggttgaggga
cccaagggtaacagaggttacaatggtgagaagggagaaacaggcccacgaggcccaatg
tgggaaccaccccagaactaccagatgaagggtgatcgaggagaacctggacttaatggg
cttcctggacctgctggcgagcccggacctcagggagagaacggacttccaggccgtcct
ggcctttcgggaccccagggtgatatcggagttccaggcttccccgggtcgaagggtgac
acaggagaccgtggcttcaatgggcgaccgggacaggatggacttgatggaccaaagggc
ttgccgggtcttcctgggttgccgggtaaccctggttacataccaccagttggcttcctc
atgacgaaacacagccagtctcgtaacatcccagaatgccctacaggaatgaacaagatg
tgggaaggctacagtctactatatgttgaaggcaacgagagatcacatcaccaggatctt
ggctgggccggttcctgtataagacgcttcaacacaatgccattcctcttctgcggcacc
gacaacgtctgcaactatgcaagcagaaacgacaagtcatactggctctcaacgaacgct
cctatgcccatgatgccagttgcagataacgacatcccgccatatatcagtcgatgcgtg
gtttgtgatgccccatctaacgtgttggctgttcactctcagacccttgagatcccagag
tgccccattggctggtctggactttggattggatacagttttgtgatgcacactggagcg
ggccccagcggcggtggacaggctttgtctagccccggcagttgtctcgaagacttcagg
gccacaccattcatcgagtgcaacggagcccggggtacctgccacttcttcgcgaataaa
ttcagcttctggctgaccaccatagcacagaatcagcagtttagaacgcccatctcagaa
actctgaaagccggaaaccttaggtcacgcgttagtcgctgtcaagtttgtgccaaagtt
gtaacaggactataa
DBGET
integrated database retrieval system
