Mya arenaria (softshell): 128219704
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Entry
128219704 CDS
T09995
Name
(RefSeq) collagen alpha-2(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
maea
Mya arenaria (softshell)
Pathway
maea04382
Cornified envelope formation
maea04512
ECM-receptor interaction
maea04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128219704
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128219704
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128219704
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
maea04147
]
128219704
00536 Glycosaminoglycan binding proteins [BR:
maea00536
]
128219704
Exosome [BR:
maea04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128219704
Glycosaminoglycan binding proteins [BR:
maea00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128219704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128219704
NCBI-ProteinID:
XP_052783590
LinkDB
All DBs
Position
15:complement(13384622..13428089)
Genome browser
AA seq
1764 aa
AA seq
DB search
MELRIICLAVAISSISSLVQGQFRNRTDPECGGCTTGNGCRCVGEKGSRGFPGSPGPQGP
QGNTGFEGPEGLVGAKGLKGEPGVPGITGPKGDRGKMGMPGFPGISGIPGLQGPPGPRGI
QGLDGCNGTQGEPGVPGLPGTRGFDGQPGRDGLMGMKGEPAQAGEGIKGSKGESGLDGQP
GVPGRNGQDGTPGLPGEPGPRGYKGDKGDAGLTGPKGAMGIVFKPEKGDKGVRGPVGPPG
PPGTTKLPFTGNESYTGPQGDKGPKGEKGEPGYEGERGYPGLDGLPGRIGNPGMNGEKGV
PGIAGPRGKQGLPGVPGFMGPKGDRGMDGLPGLSGIPGMKGERGFEGEKGMVGPRGPQGP
PGGPGGGDGRPGEPGPPGPRGPNGEDGLPGLPGQRGESGPEGLRGGPGVPGPPGQQGLDG
PRGDKGDQGLQGFPGIDGLPGQNGYPGPKGEYGPKGEPGLSIPGEPGRGGESGRDGLPGF
KGDRGPRGLPGLPGNSSVGRPGLPGLKGEIGPPGLQGLDGRPGLPGRDGTKGDRGGLCNQ
CQDGIKGEKGTPGLLGRPGLQGERGNEGYKGEKGEPGFDGNPGLQGPMGSTGLKGDRGLD
GLPGPAGEDASIPNEYFQPPKGEPGENGLNGLPGMKGEPGPQGPRGLEGLPGLQGAKGDS
GGDGVPGRPGERGQSGNPGLKGERGFGMNGLPGDRGDPGQPGLPGLPGMKGDKGVPGETV
IVGKGAKGDRGPAGPPGIPGMDGLPGVDGESGNPGLPGLDGLPGRPGNDGLDGRPGESGP
RGLTGPRGDKGESGPGGLPGFDGPAGEPGVPGLSGLPGMKGEPGTPGNAVIGPKGDAGID
GVNGVPGLPGRKGERGMPGLDGLPGQKGESGLDGVPGVNGLPGMKGEAGPEGPRGLPGLS
GEPGLPGIPGDVGGKGEPGLSGVPGLSGARGQKGESGLPGMDGLPGLQGESGPRGPNGDD
GLPGLPGPKGDMGVIGFPGEPGRDGLPGLQGIGGPKGERGFPGVNGEPGLNGLPGGKGES
GVPGLPGLDGTPGQPGRGGQKGEAGPNGLDGRPGPRGLDGVPGLTGMKGDSGEPGFGQKG
EPGFPGEPGREGLDGIPGVAGQKGESGVPGFPGMKGERGFDGVPGTSGPSGLDGLPGMKG
APGLPGRPGEPGRQGEDGLPGLDGVAGFKGEDGLPGRSGLPGRDGEKGERGLTGPEGPSG
APGLPGLKGEPGLSGLPGLQGMKGQPGFPGEPGRDGEKGASGFPGANGEPGRAGEKGERG
FSGAPGRKGETGRDSVGQKGEPGLPGMPGLEGQRAEKGEPGLRGLDGIPGLKGEAGYPGE
GVPGIKGEAGFPGAEGRKGERGLPGVDGTPGLNGRKGDRGEPGLPGPQGEDGLPGLAGEK
GDEGIPGMPGLEGMKGDSGLPGLAGPGGRKGEPGIPGVEGPKGNRGYNGEKGETGPRGPM
WEPPQNYQMKGDRGEPGLNGLPGPAGEPGPQGENGLPGRPGLSGPQGDIGVPGFPGSKGD
TGDRGFNGRPGQDGLDGPKGLPGLPGLPGNPGYIPPVGFLMTKHSQSRNIPECPTGMNKM
WEGYSLLYVEGNERSHHQDLGWAGSCIRRFNTMPFLFCGTDNVCNYASRNDKSYWLSTNA
PMPMMPVADNDIPPYISRCVVCDAPSNVLAVHSQTLEIPECPIGWSGLWIGYSFVMHTGA
GPSGGGQALSSPGSCLEDFRATPFIECNGARGTCHFFANKFSFWLTTIAQNQQFRTPISE
TLKAGNLRSRVSRCQVCAKVVTGL
NT seq
5295 nt
NT seq
+upstream
nt +downstream
nt
atggagttgagaataatttgcctggccgtggccattagttccatatcaagtttagttcaa
gggcaattccgaaatcgtaccgatccagaatgtggcggttgtacgaccggtaatggatgc
agatgtgttggagaaaaaggatctcggggttttccgggttcccctgggccacagggaccc
cagggaaacacaggcttcgaagggccagagggactggttggagccaaggggttgaagggt
gaaccaggcgtgccaggaatcactggacccaagggagaccggggcaagatgggtatgcca
ggctttccgggtatcagcggtattcctggtttgcagggtcctcctggccccaggggtatt
caaggtcttgacggatgcaacggaacacagggagagcctggagtaccaggtttgcccgga
acccgtggctttgatggacagcctggacgagacggactcatgggaatgaaaggagagccc
gcccaggccggcgagggaatcaagggatcgaagggagaatccggacttgacggacagcct
ggagttcctggtcgtaacggacaggatggaacaccaggattaccaggagagccaggacct
cgcggatacaaaggagacaagggagatgcaggactgacgggcccgaaaggagccatgggt
atcgtcttcaaaccagagaagggagataagggagttcgcggtcccgtcggaccaccagga
cccccgggcacaaccaagctgccatttactggaaatgaatcttacaccgggccacaggga
gacaagggtccaaagggagagaagggcgagcctggttacgagggagaacgtggctaccca
ggactggatggtcttcccggtcggattggaaacccgggtatgaatggagagaagggtgtg
ccaggtattgctggccctaggggcaaacaaggtctgcccggtgttcctggattcatggga
cctaagggtgaccgtggtatggatggcttgcctggtttgtcaggtatcccaggtatgaaa
ggagagcgtggatttgagggtgaaaaaggcatggttggaccccgtggaccccagggaccc
cccggtggaccaggagggggtgacggacgcccaggagagccaggcccgcccggtcctcgt
ggacctaatggagaggacggcctgcccggattaccaggccaacgtggagagtctggccca
gaggggctccggggcggcccaggagtgcccggacctccaggacaacagggacttgacgga
cccagaggagataagggagaccaaggattacaaggatttcctggtattgatggtcttcct
ggccagaacggctaccctggacccaagggcgagtatggaccaaagggagagcccggattg
tcgattcctggagagccaggccggggtggggagtctggaagggatggattacctggcttt
aaaggcgacagaggaccgagaggtttgcccggtttacccggaaattcatctgttgggcgg
ccaggattacccggattaaagggagaaattggcccacccggattacaaggattggacggg
cgaccaggactgccgggacgagatggtaccaagggagacagaggaggattatgtaatcag
tgccaggatggaattaagggcgagaaaggaacacctggtctgcttggacgcccgggcttg
cagggtgaacgcggtaatgagggttacaagggtgaaaagggagagccagggtttgatggt
aacccagggttacagggtcccatgggatctacaggtttgaagggagatcgtggattggac
ggtttaccaggacctgcgggagaagatgccagtattcccaatgaatattttcagccacca
aagggggaaccaggagaaaatggcttgaacggtctgcctggaatgaagggagagcctggc
ccgcagggtccccgtggtttagaaggactgcctggactccagggtgctaagggagatagt
ggtggtgatggtgtacctggccgcccaggtgagagaggtcagtcaggaaaccccggactg
aaaggagagcgtggatttggaatgaatggactgccaggtgatcgaggtgacccaggacag
cccggtcttcctgggctcccaggaatgaagggtgacaagggtgtgccaggcgagacggtt
attgttggcaagggtgctaagggtgaccgtgggccagcaggaccccccggtatcccgggc
atggatggccttccaggtgttgacggagagtcaggaaaccccgggcttccaggacttgat
gggctgcctggacgaccagggaatgatgggcttgatggaaggccaggagagtcgggaccg
agaggattgactggaccacgtggtgacaagggagagagtgggcctgggggcttgcccggt
ttcgatggaccggcaggagagcccggagtaccaggactgtcaggacttcctggcatgaag
ggagagcctggaacacccggtaatgctgtcattggaccaaagggcgatgcaggtattgat
ggggtgaacggagttccaggactacccggacgaaagggagaaagaggtatgcccggtttg
gatggacttccaggtcagaagggagagtctggattagacggtgtgcccggagtgaacggt
ctgccaggaatgaagggagaagcaggaccagaaggcccacggggcttgcccggactttct
ggagaacctggcctgcccggaataccaggtgatgttggcggcaagggtgaacccggattg
tccggagttcctggattatcaggtgcccgtggtcaaaagggagagtctggattacctggg
atggatgggttgcccggattacagggagagtctggtccacggggccccaacggagatgat
ggactaccgggactgccaggtcctaagggagacatgggagtgatcggattccctggtgaa
ccaggacgtgatgggttaccagggttacaggggattgggggtccaaaaggtgaacgggga
ttcccgggtgttaacggcgaaccaggacttaatggactgccaggtggtaagggtgaatca
ggagtgcctggattacccggtctagatggaaccccgggtcagcccggacgtggaggtcag
aagggagaggctggaccaaacggattggacggcaggcccggacctagaggacttgatggt
gtgcccggactgacaggaatgaagggtgattcaggtgaaccaggattcggtcagaagggt
gaaccaggtttcccaggggaaccaggaagagagggattggatggcattcctggagtagca
ggacagaagggtgaatcaggagtgccaggattcccaggaatgaagggagaaaggggattc
gatggagtgccaggcaccagtgggccatcagggctggatggacttcccggcatgaaagga
gcaccaggattacccggccggccaggagagcccggacggcagggagaagatggattacct
ggccttgatggtgtggccggatttaagggagaggatggattacctggacgatctggattg
cctggacgggatggagagaagggagaacgtggcttgaccgggcccgagggaccttcagga
gccccaggactgccgggattgaagggagagcccggattgtcaggattgcctgggctacag
ggaatgaagggacagcctggtttcccaggggagcccggaagggatggagaaaagggtgca
tcaggttttccaggtgccaacggagagcctgggcgtgcaggagaaaagggcgaaagagga
ttttctggagcccctggtcgtaagggagaaaccggtcgtgatagtgtgggccagaaggga
gagccaggactgcctggaatgcctggattggagggtcaacgtgcagagaagggtgaacca
ggtctgcgtggtttggacggaattcctggactgaagggagaggctggttaccccggtgag
ggtgttcctggaatcaagggtgaagccggattccccggagctgagggtcgcaaaggtgaa
cgcggtctcccaggtgtggatggaacaccaggtttaaatggacgcaagggtgaccgtgga
gagcctggattgcctggccctcagggagaagatggactgccaggacttgccggagaaaaa
ggggacgagggaattccagggatgccaggactggagggtatgaagggtgactctgggctt
ccgggcttggctggaccgggaggacgcaagggagagcctggaatacctggggttgaggga
cccaagggtaacagaggttacaatggtgagaagggagaaacaggcccacgaggcccaatg
tgggaaccaccccagaactaccagatgaagggtgatcgaggagaacctggacttaatggg
cttcctggacctgctggcgagcccggacctcagggagagaacggacttccaggccgtcct
ggcctttcgggaccccagggtgatatcggagttccaggcttccccgggtcgaagggtgac
acaggagaccgtggcttcaatgggcgaccgggacaggatggacttgatggaccaaagggc
ttgccgggtcttcctgggttgccgggtaaccctggttacataccaccagttggcttcctc
atgacgaaacacagccagtctcgtaacatcccagaatgccctacaggaatgaacaagatg
tgggaaggctacagtctactatatgttgaaggcaacgagagatcacatcaccaggatctt
ggctgggccggttcctgtataagacgcttcaacacaatgccattcctcttctgcggcacc
gacaacgtctgcaactatgcaagcagaaacgacaagtcatactggctctcaacgaacgct
cctatgcccatgatgccagttgcagataacgacatcccgccatatatcagtcgatgcgtg
gtttgtgatgccccatctaacgtgttggctgttcactctcagacccttgagatcccagag
tgccccattggctggtctggactttggattggatacagttttgtgatgcacactggagcg
ggccccagcggcggtggacaggctttgtctagccccggcagttgtctcgaagacttcagg
gccacaccattcatcgagtgcaacggagcccggggtacctgccacttcttcgcgaataaa
ttcagcttctggctgaccaccatagcacagaatcagcagtttagaacgcccatctcagaa
actctgaaagccggaaaccttaggtcacgcgttagtcgctgtcaagtttgtgccaaagtt
gtaacaggactataa
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