Mya arenaria (softshell): 128219706
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Entry
128219706 CDS
T09995
Name
(RefSeq) collagen alpha-1(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
maea
Mya arenaria (softshell)
Pathway
maea04382
Cornified envelope formation
maea04512
ECM-receptor interaction
maea04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128219706
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128219706
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128219706
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
maea04147
]
128219706
00536 Glycosaminoglycan binding proteins [BR:
maea00536
]
128219706
Exosome [BR:
maea04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128219706
Glycosaminoglycan binding proteins [BR:
maea00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128219706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128219706
NCBI-ProteinID:
XP_052783592
LinkDB
All DBs
Position
15:13428325..13482585
Genome browser
AA seq
1762 aa
AA seq
DB search
MKTAGIVHLSLPLLVIFSWIADVSYGAACKGCTSAVCICKGQKGYPGAPGLTGLQGSQGF
PGFPGPEGSMGRRGQPGTTGAEGAEGPKGLRGDTGANGFTGVPGTPGFDGIEGPVGPPGY
DGCNGTKGAPGFPGLNGLSGQPGSPGLDGRPGPKGEPGEYGFVTVGAPGDVGETALPGRP
GLAGFDGRPGPRGIDGAKGQPGMKGMGGEDGRPGPDGDAMPELPKGERGSTGDIGEQGPV
GPPSYFEKNPDDQEIFKGPPGMEGMKGEAGEDGARGLPGVPGLDGLAGEDGIKGPKGEHG
GHGRLGKRGKDGPPGAYGAKGIKGEDGRGGIPGLSGAKGYGGDKGYKGMQGDLGPIGIKG
NLGGGTGLKGLPGLEGPTGEKGFKGLPGFPGDIGPPGFRGLTGPPGVDGEPGLPGEPGFS
VKGERGGDGTPGSDGRPGRDGLPGLPGNRGEKGSQGDRVIGPAGLPGLPGRDGRPGLQGF
PGDAGFTGEPGIPGNGFDITGPRGVPGFPGDPGPEGPEGLEGLPGQPGFNGQQGDDCPFC
PDGLPGRKGEPGTEGFPGRDGYPGFDGEQGRKGELGNNGLNGIPGFAGTEGLKGIKGESG
FPGRKGVKGQLIFPPPDIRKEKGDKGEPGLQGLQGLPGQPGDPGRSGLMGFNGPQGMKGM
PGLPGMGGLDGLPGLPGLPGPKGMFGDFVNGTNGLKGPKGFDGFNGEPGLKGRRGDKGDQ
APLISAMKGVYGEVGFQGLPGMNGLQGLPGMKGTSGFPGEPGREGQPGLSGNPGRDGSPG
FRGADGDKGFPGIPGDSGPNGYPGEPGVPGRDGFSGVEGRKGESGEPGRFLGSLIPGARG
TPGRNGLRGQDGFPGGVGEDGIPGRPGLKGYPGDNGRPGLGGYPGRKGDRGIMIDGLPGY
KGEPGAPGEPGLFGLVGIRGEDGLPGLPGTPGEKGYPGEFGRDGFPGLQGQEGRPGPKGY
PGFNGRVGLKAEKGVMGMSGTPGSPGQDGLPGARGLPGMSGERGIPGLRGSPGLDGFTGM
KGDPGFPGTSGRPGRDGQDGFKGLSGEPGLPGLDGLRGDDGIPGLDGVKGPKGENGLSYR
GENGDAGQPGLDGLPGRPGAVGLKGRQGEMGLPGLDGMRGDEGFDGRPGEAGGTGRPGRK
GERGLDGLPGFPGEDGRRGFDGRPGLQGLPGPKGIPGLDGFDGEPGRLGEPGDLGYPGRA
GRPGLDGLTGLEGERGIDGFPGRDGEPGVPGSSGPEGLPGLRGDPGLPGLPGFDGRKGIE
GEPGLFGLPGEPGDDALPGLPGLRGEDGLPGRPGNRGLKGYPGEMGQDGLPGLPGQRGEP
GQVFGGVQGERGVDGLPGFPGMPGDAGFEGRRGLQGFQGMKGEPGFNGESGRFGRNGLPG
LKGFPGDRGLPGFDGRKGLRGDNGYPGEPGRPGMDGFAGLDGFSGLEGDRGYKGLPGDIG
PMGPQANLLPPLKGEPGFPGNPGLSGLPGRKGQSGYPGLDGFPGDKGVRGFPGEDGFRGM
KGEAGQDGFPGVQGRDGNRGMQGDAGLTGLQGGGGTGPGIFFARHSQQTYVPDCPSGTSK
VWDGYSLSYVVGNSRAQSQDLGQAGSCLRRFSTMPFMFCNINNVCNVAWRSDYSYWLSTN
QPMTEMMDPVQGAQIEPYISRCAVCEAPSEVIAIHSQTMRIPDCPIGWTGLWIGYSFLMG
TGAGGDGAGLDLSSVGSCLEDFRAMPLIECHGKGTCNYYSSSTSYWLATIENNAQFRTPI
SETLKAGNLRMRISRCQVCMRF
NT seq
5289 nt
NT seq
+upstream
nt +downstream
nt
atgaagacggcgggtatcgtccatttgtcgctcccgctactggttattttctcatggata
gccgacgtttcttacggagcggcatgtaagggctgtacttctgcagtatgcatctgcaag
ggccagaaagggtatcctggcgctccaggcctgacaggtctacaggggtcacagggattt
cctggatttccgggccctgagggatccatgggaagaaggggccagcccggaaccactgga
gcggaaggggctgaggggcccaagggtttgaggggagacactggagcgaatggttttact
ggcgtgccaggaacaccgggttttgacggcattgaaggcccagttggtcctcctggctat
gacggatgtaatggaactaagggagctcccggatttcctggtttgaatggactgagtggt
caaccaggatcacctggcctcgatggccgcccgggacccaagggagagcctggagaatat
gggtttgtgactgttggagccccgggtgacgtcggagaaaccgcattgcccggcagacca
ggcttggctggatttgatggcagaccgggaccgcgaggtattgacggagcgaagggccag
cctggtatgaaaggaatgggaggagaggatggtcgccctggtcccgatggtgatgccatg
cctgaactgcctaagggagagaggggaagcacaggcgatattggagaacagggaccagtg
ggcccgcccagctactttgagaagaacccagatgaccaggagatatttaaaggcccgcca
ggcatggagggaatgaaaggagaggcaggcgaggatggggcccggggcttgcctggcgtt
cctgggcttgatggtttggctggcgaagacggcataaaggggcccaagggagaacatggt
ggacatggcagactgggtaagcgtggtaaagatggaccccccggtgcctacggtgccaag
ggtatcaagggcgaggatgggcgaggtgggatcccaggtctctcaggggccaagggttat
ggtggagataaaggatacaagggaatgcaaggagaccttggacctattggtatcaaaggc
aacttgggtggaggaaccggacttaagggcttgccaggactggaagggccgacaggagaa
aagggtttcaaaggactgccaggtttccctggtgacataggaccgccaggcttccgcggg
cttacaggacccccgggtgtcgatggggagcctggcctaccaggagagcccggatttagt
gtgaagggcgagcgagggggcgatggtacacctggaagtgatggtaggccagggcgagat
ggattacctggactcccaggcaataggggagagaaaggtagccagggcgaccgtgtaatt
ggtcccgctggcttgcctggactcccaggacgagatggacgacctggacttcagggcttc
cccggagatgctggcttcactggtgaacctggcattcctggaaatggatttgacatcaca
ggcccacgtggagtgcccggatttcctggagacccaggtccagaagggcctgagggcttg
gaaggcttgcctggacaacctgggttcaatggacaacagggtgatgactgtccgttctgc
ccagatggacttccagggcgtaaaggtgaaccaggaaccgagggattcccaggtcgggat
ggttaccccggatttgatggggagcagggcaggaaaggagaattaggaaacaacgggctg
aatggaattcctggttttgccgggacagagggtctgaaaggcataaagggagaatctggg
tttcctggccggaagggagtcaagggtcagctgattttcccccctccggatatcagaaag
gaaaagggtgataaaggagagcccgggctccagggactgcaaggattaccaggacaaccc
ggagaccctggcagaagcgggctcatgggatttaatggaccccagggaatgaagggcatg
ccgggactgccaggaatgggcggtctagacggactaccgggtcttcccggtttgcctggt
cctaaaggcatgtttggagattttgtcaacgggactaatggactaaaggggccaaagggc
tttgatgggttcaacggagaacctggtcttaagggacggagaggtgacaaaggagaccaa
gccccgctgatatcagcaatgaagggagtatacggagaagtgggcttccaggggttgccg
ggcatgaacggactacagggactgcctgggatgaagggaacatctggattcccaggagaa
cctggcagggaggggcagccaggcttgtctggaaatcctggtcgagatggaagccccgga
ttccggggtgcagatggggacaagggatttcctggaattccgggagactctgggccaaac
ggttaccctggagaaccaggtgttcctggtagggatggattttctggagttgaaggcaga
aagggagagagtggtgagcctggacgtttcttggggtcactgattcctggagcgcggggg
acacccggccgtaatggattacggggccaagatggtttcccaggaggagttggtgaagat
ggaattcccggacgtcctgggttgaagggatacccaggagataacgggagaccagggttg
ggtggatatccaggtaggaaaggagatcgtgggatcatgatcgacggacttccgggctac
aagggtgaaccgggcgcaccgggagagcctggtctttttggcctagttggaatccgtgga
gaggacgggcttcctggtttacctggaacacccggagaaaagggttaccctggtgaattt
ggccgggatgggtttccaggactacagggccaggagggcagaccaggacctaaaggctat
ccaggatttaatggacgagttggtttgaaggcagagaagggtgtgatgggcatgtcaggc
acgcccggatctccaggtcaagatgggctccctggagcccgaggattgccaggtatgtct
ggtgagagaggtatcccaggactacgtggatcccctgggcttgatggttttacgggcatg
aagggcgaccctggatttcctggaacttcagggcgccccggtcgtgatggacaagatggg
ttcaaaggcttgtcaggagagcccggattgccaggattggacgggctcagaggagatgat
gggattccagggcttgatggggtaaagggaccaaaaggagaaaatgggctctcatacaga
ggagaaaatggtgatgctggacaaccgggcttagacggtttaccagggcgaccaggagcc
gtaggcttgaagggtagacagggagaaatgggcttgccaggcctggatggtatgcgggga
gatgagggcttcgatggacgcccgggagaggctggtggcacgggtcgcccaggcaggaag
ggagaaagaggccttgatggccttccaggtttccctggggaagatggacgcaggggattc
gatggtcgacctggacttcaaggtttaccaggcccaaagggaatccctgggcttgatggt
tttgatggagagcctggacggctgggggagccaggagatttgggttacccgggtcgggct
gggcgccctggcttggatggacttacggggcttgaaggagagaggggtattgatgggttc
ccaggacgtgatggagagcccggggtgcctggatcatcagggcctgaggggctaccgggt
ctgagaggagatcctgggcttccgggtctacctggcttcgatgggcgcaagggaattgag
ggtgagcccgggctgtttgggctgccaggagaacctggagatgatgctcttccaggactt
cctgggttgagaggtgaggacggtctacctggacgtcccggcaacaggggtctgaagggt
taccctggcgaaatgggtcaggatgggttgccagggttaccaggacagaggggagagccc
ggacaggtgtttgggggagtccagggtgagcggggagtcgatgggcttcccgggtttcca
ggaatgccaggtgatgctggatttgaaggccgccgaggtcttcagggcttccaggggatg
aagggagagcccggcttcaatggggagtctggcaggtttggcagaaacggccttcctggg
cttaagggtttccctggagatcgcggtttgccagggtttgatgggaggaagggcctaagg
ggagataatggataccctggggagcccgggcgaccaggcatggatgggtttgctgggttg
gacggcttctccgggctggaaggtgacagaggatacaaaggtttacccggagacattgga
cccatgggcccacaggctaatttactcccacctttaaagggagaaccaggtttccccggc
aacccaggactgtcaggcctgcccgggcgcaagggacaatcaggctacccagggcttgat
gggttcccaggcgataagggcgtacggggcttccctggagaagacgggttcagaggcatg
aaaggggaagctggtcaggatgggttcccgggggtccaaggacgagatgggaataggggc
atgcagggggatgctggtttgacaggattacaaggtggaggaggaaccggacctggtatc
ttctttgcaaggcatagccagcaaacatatgtgccagattgcccctccggcacaagcaag
gtctgggatggatactccctctcgtatgtagtgggcaattccagggcacagtctcaggat
ttaggtcaagcaggcagctgtctacgtcgcttctccactatgccattcatgttttgcaac
atcaacaacgtgtgtaacgtggcttggcgcagtgactacagttactggctgtcaaccaac
cagccaatgacggagatgatggacccagtacagggcgcacagatcgagccctacatcagc
agatgtgcagtatgtgaggcaccgtccgaggtgattgccatccacagtcagaccatgaga
atccctgactgcccgattggctggactggtctctggatcggttactccttcctcatgggt
actggagctggtggtgacggtgcaggtcttgacctctcgtcagtcggctcgtgtcttgag
gacttccgggccatgccgcttatcgagtgtcacggcaagggcacgtgtaattactactct
tcttccacgagctactggctggccactatagagaataacgcgcagttccgcacgccgatc
tctgagactttgaaggccggtaatctacgtatgaggataagtcgttgtcaagtgtgtatg
agattttaa
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