Mya arenaria (softshell): 128219910
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Entry
128219910 CDS
T09995
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03020
RNA polymerase
maea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128219910
09124 Replication and repair
03420 Nucleotide excision repair
128219910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128219910
03400 DNA repair and recombination proteins [BR:
maea03400
]
128219910
Enzymes [BR:
maea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128219910
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
128219910
DNA repair and recombination proteins [BR:
maea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
128219910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
AcetDehyd-dimer
Motif
Other DBs
NCBI-GeneID:
128219910
NCBI-ProteinID:
XP_052784033
LinkDB
All DBs
Position
15:22771910..22792130
Genome browser
AA seq
1950 aa
AA seq
DB search
MAYTGDSNATLRDAKRVQFGILGPDELRRLSVTEGGLKYSETMEGGRPNLGGLMDPRQGV
IDRSARCQTCAGNMSECPGHFAHIELAKPVFHVGFLTKTIKVLRCVCFYCSKLLVEPSNP
KMKDVLSRSKGQPGKRLSAVYDLCRTRKECEGGDEMDTKLEKDDPGREGNDAKKKIGHGG
CGRYQPIIRRMGLDLTCEWKKTNEENQEKKIVLTAERVYEILKRISDEESTVLGMDPKFA
RPDWMVLTVMPVPPLCVRPAVVMFGSARNQYDLTHKLSDIIKANNNLKRNEQNGAAAHII
AEDTKMLQFHVATFTDNELPGLPRAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSA
RTVITPDPNLRIDQVGVPRTIAQNMTFPELVTPFNIDRLHDLVRRGANQYPGAKYIVREN
GERIDLRFHPKASDLHLQIGYKVERHMQDGDYVVFNRQPTLHKMSMMCHQVKILPWSTFR
MNLIVTTPYNADFDGDEMNLHLAQSLETRAEISQLASVPRMIITPQSNRPVMGIVQDTLT
AVRKMTKRDVFLTRGEVMNILMFLPSWDGHMPQPAILKPKPQWTGKQIFSLIIPGRVNLI
RTHSTHPDEEDKGPYRWISPGDTKVLIEDGELMSGILCKKSLGTSAGALAHVVFLEMGYE
IAGYLYGNIQTVVNNWLLIEGHSIGIGDTIADPETYIEIQDTIKKAKLDVIEVIEKAHND
ELEPTPGNTLRQTFENQVNRILNDARDKTGSKAQKSLSEFNNFKAMVVAGSKGSKINISQ
VIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGG
REGLIDTAVKTAETGYIQRRLIKAMESVMIKYDGTVRNQVEQLIQLRYGEDGLEATRVEF
QSLPTLKPSNRAFEKNFKFDPTNERQLKKSLTEDIIKDLLSDAHCLSEIETEWETLVNDR
DMVRQIFPSGDSKIVLPCNLQRMIWNAHKIFKIDKRKVTDIHPIKIIEDVKQLCRRLTVV
PGEDRLSVLANQNATILMKVLIRSTFCSKRVIEEFRLSNEAFDWLIGEIETKFQHAQVHP
GEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFL
IGQASRDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVITEDQEWVNVYYEMPDFD
VSKISAWLLRIELDRKRMTDKKLTMESISEKITAGFGDDLNCIFNDDNAEKLVLRLRIMN
SDDSKMHDEEEAADKMEDDVFLRCIEANLLSDMSLQGNEAIAKVYMHLPNTDDKKRIFIT
DEGEFKAVAEWILETDGTSLMRVLSERDVDPIRTTTNDIVEVFATLGIEAVRKSIEKEMN
HVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGALARCSFEETVDILMEAA
AHAECDPMKGVSEAIMLGQLARIGTGCFDLLLDAEKCKYGMEIPTNIGAGMMGGVGTGMF
FGGGASPAAGMSPQMTPWQQSATPGYAGAWSPGVGSGMTPGAAGFSPSQSESGYSPGYSP
AWSPQPGSPSSPSSPYIPSPRGAMSPSYSPTSPSYIPSSPAMSGGTPQSPGYSPTSPSYS
PTSPGYSPSSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTTPSYSP
TSPSYSPTSPSYSPSSPNYSPSSPSYSPSSPSYSPTSPSYSPSSPNYSPSSPSYSPSSPK
FSPQSPSYSPTSPSYSPSSPKYSPASPSYSPTNFSYSPSSPQYSPSSPAYSPSSPAYSPG
AASDRGSHKYSPSSPQYSPTSPTYSPSSPQYSPASPSYSPSSPQYSPASPSYSPSSPQYS
PSSPAYTPTTPKYSPTSPTYSPADEDSDMD
NT seq
5853 nt
NT seq
+upstream
nt +downstream
nt
atggcctacaccggcgattccaacgcaactttgagagatgcaaagcgagtgcagtttggt
attctgggtccagatgaacttcgacggttgtcggtaactgaaggaggtctcaaatactca
gagacgatggagggaggaagaccgaatctcggaggactgatggacccaagacagggtgtc
attgatcgctcagcacgatgccagacatgtgctggaaacatgtctgaatgcccagggcat
ttcgctcacattgaactggccaagcctgtatttcacgttggttttcttacaaagacgatc
aaagtgctgagatgcgtttgtttctactgctccaaactgcttgtcgagccttccaaccca
aagatgaaggatgtcttgtctcgatcaaagggtcagcccggaaagcgtctgtcggctgtt
tatgacctgtgtaggacaaggaaggagtgtgagggaggcgacgagatggacaccaagcta
gaaaaggacgaccctggcagggaggggaatgatgcgaagaaaaagattgggcatgggggt
tgtggacgctaccaacctatcatccgtcgaatggggctggacctgacatgtgagtggaag
aaaacaaatgaggagaaccaggagaagaagattgtcctcactgccgagagggtgtacgag
atactcaagaggatctcagatgaagaatccactgtcttgggtatggacccaaagtttgcg
cgcccggactggatggttctcacggttatgcctgtcccccctctgtgtgtgagacctgct
gtggtcatgtttgggtctgccaggaaccagtacgatttgacccacaagctgtctgacatc
atcaaggcaaacaataacctgaagcgcaatgaacagaacggagcagcagcccacatcatt
gctgaagacacgaagatgcttcagttccatgtggctacattcacagacaatgaattacca
gggctgcccagggctgtacaaaagtcaggtcgcccgttgaagtctgtcaaacagcggtta
aaaggtaaagaaggtcgtgtgagaggaaacttgatgggtaagcgtgttgacttctccgcc
cgtactgtcatcacacccgaccctaacctccgcatcgaccaagttggcgttcccaggact
attgcacagaatatgacattcccagagcttgtcacaccatttaacatcgacagactacat
gatcttgtgcgtcgaggtgcgaaccaataccctggggccaagtatattgtaagagaaaat
ggcgagagaattgatctccgctttcatcccaaggccagcgaccttcatctccagattggg
tacaaggttgagcgtcatatgcaggatggtgactacgtggtgtttaatcgtcagcccacg
ctgcataagatgagtatgatgtgtcatcaggtgaaaatcctgccctggtccacattcaga
atgaacctcattgtaacaacaccatacaacgctgactttgacggagatgagatgaatctc
catctggcccagtctttggagacccgggcagagatctcccagctggcatccgtcccccgt
atgatcattacgccccaatcaaacaggcccgtcatgggaattgtacaggacaccctcacg
gctgtccgcaagatgactaaacgggatgtgtttttaaccaggggtgaggtaatgaacatt
ctcatgttcctgcccagctgggacggccacatgccacagccagccatcctgaagcccaag
ccccagtggacgggcaagcagatcttctctctgatcattcccggcagggtgaacctgatc
agaacacacagcacacatccggacgaggaggataaaggcccgtataggtggatctcccct
ggtgatactaaggtgttgatagaagatggagaattgatgtctggaatcctttgtaagaaa
tccctggggacatcagctggtgccttggcccacgtcgtcttcctggagatgggatatgag
atcgcaggttacctgtatggtaatatccagaccgttgtgaacaactggctactgatcgaa
ggtcatagtatcggtattggtgacacaattgccgatccagagacttacatcgagattcag
gacacaatcaagaaagctaagttggacgtgatagaagtgattgagaaagctcacaacgat
gagcttgagccgacccctggtaacacactgagacagacgtttgagaaccaggtgaacaga
atcctcaacgacgctcgtgacaagactggaagtaaagctcagaaatcactgtctgagttc
aacaacttcaaggctatggtggtggctggatcaaaagggtctaagattaacatctcacag
gttattgcctgtgtaggccaacagaacgtggagggaaagcgtatcccgttcggcttccgt
caccgcacactacctcacttcattaaggatgattacgggcctgagtcacgtggcttcgtg
gaaaactcgtacctggccggtcttacaccatcagagttctactttcacgccatgggaggt
cgagagggacttattgatacagctgtaaagacagctgaaactggttacattcagagacgt
cttatcaaagccatggagagtgttatgatcaagtatgacggcacggtgagaaaccaggtg
gagcagttgatccagctccgatacggtgaggatgggctggaggccacacgggttgagttc
cagtccctccccacgctcaaaccatccaaccgggcctttgagaaaaacttcaagtttgat
ccaacaaatgagagacagttgaagaaaagtcttactgaagacatcatcaaggacttgctg
tctgacgcccactgcctgtcagagattgaaactgaatgggagacactggtgaatgacaga
gacatggtgcgacagatcttcccctccggagacagcaagattgtgctgccctgtaatctg
cagagaatgatctggaacgctcacaagatcttcaagattgacaaacggaaagtcacagat
atccacccaatcaagatcattgaagatgttaagcagctgtgtagaaggctgacagttgtg
ccaggagaagacagactgagtgttctggccaaccagaacgccactatcctcatgaaagtg
ctcatccggtccacattctgctccaagcgtgtcattgaggagttccgactctctaatgag
gcctttgattggctcattggagaaattgagacgaaattccaacatgcacaggttcaccca
ggcgagatggtgggtgctctagctgcccagtccctcggagagcctgccacccagatgaca
ctcaacactttccattacgccggagtgtccgccaagaacgtaaccctcggtgtgcccaga
ttgaaggagatcattaacatctcaaagaagcccaagacaccttcactgactgtgttcctt
attggccaggcttccagagatgctgaaaaggctaaggatgtgctgtgccgtttggagcac
acaacactacgcaaggtaacagccaacacggccatctattacgatccggacccacagaac
actgtgatcactgaagaccaggagtgggtgaacgtgtattacgagatgccggactttgat
gtgagcaagatctctgcctggttgctgcgtattgaactggacaggaagagaatgacggat
aagaaactcaccatggagtccatatcggagaaaatcactgctggttttggtgatgacttg
aactgtatcttcaacgacgacaatgctgagaagttggtgctgcggttgagaatcatgaac
tcagatgacagcaagatgcatgatgaggaggaagcagcagacaagatggaagatgatgtg
ttcctacgttgtatcgaggccaacctgctctcagatatgtccttgcagggcaatgaagcc
atcgctaaggtgtacatgcacttgcccaatactgatgataagaagcgcatcttcatcacg
gacgagggcgaatttaaggcggtggccgagtggattctggaaactgacggcacttctctc
atgagagtgctcagtgaacgtgatgtggaccccatcaggacaactaccaacgatattgtg
gaagtgtttgctacccttggaattgaagctgtccgtaagtccattgagaaggagatgaac
catgtgatctcgttcgacggttcttacgtaaactaccgtcacttggccctgctgtgtgac
gtgatgactgctaagggccatctcatggccattacccgtcacggcatcaacagacaggag
actggtgcacttgctaggtgctcgtttgaggaaacagtcgatattttgatggaggcggct
gcccacgcagaatgtgatccgatgaagggcgtgtcagaggccattatgctgggtcagctt
gcgcgtatcgggactgggtgctttgacctgctcctggacgcggagaagtgtaaatacggc
atggagatacccaccaacatcggggccggcatgatgggaggagttggtacaggcatgttc
tttggtggaggggcgagcccggctgctggaatgtctcctcagatgaccccatggcaacag
agtgccacacctggttatgctggggcctggtcaccgggtgttggcagcggcatgacccct
ggggcagccgggttctcaccatctcagtcagagagtggctacagtcctgggtacagccct
gcatggtccccccagcctggctccccaagctccccttcgagcccctacattccaagccca
cgtggagctatgtcaccaagttacagtccgacatcgccctcgtatataccgagctcacca
gccatgtctggtggaacaccacagagtcctggatattcaccaacatcgccaagctacagt
ccaacaagtcctggatattcgccatcatcgccgaattacagtccgacgtcgccatcatat
tcgccaacaagtccttcctacagcccgacgagcccgtcgtatagtcctaccagtccatca
tattctccgacaagccccagttatagcccgactagtcccagctatagcccaacctcacca
agctacagtccaactagtcctagctattcaccgacaagtccgagctattcaccaacaagc
ccaagttactcgcccactagccccagttacagcccaacttccccctcatattccccaact
tcccccagttacagtcctacaagcccgtcatactccccaacaactccaagctactcccca
acgagtccaagctactctccaacttcaccgagctattctccaagtagccccaactatagc
ccctcttcaccaagttacagcccctcaagccccagttactccccaaccagcccctcctac
tcgccgtcaagccccaattacagcccctcgtccccatcttattccccctcctcaccgaaa
ttcagcccccagtcccccagctattcacccacctccccctcctactccccctccagtccc
aagtattcccctgcatctccaagttactccccgacaaacttcagctactcccccagttct
cctcaatattccccctcctctcctgcatactccccttcatcccctgcatatagcccaggt
gctgcgagtgacaggggatcacacaagtattccccaagctccccgcagtacagcccgaca
tccccaacatattccccctcgagtcctcaatattcccccgcaagtccgagttactcgccc
tcaagcccccaatattcccccgctagcccctcctacagcccttcaagtccccaatacagc
ccttcatcacccgcctacacacctaccaccccgaaatattcacccaccagcccgacatac
agcccagctgatgaggacagtgatatggactag
DBGET
integrated database retrieval system
