Mya arenaria (softshell): 128220225
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Entry
128220225 CDS
T09995
Name
(RefSeq) uncharacterized protein LOC128220225
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128220225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
maea03041
]
128220225
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128220225
Spliceosome [BR:
maea03041
]
Complex C
Other components
Step II factors
128220225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
AAA_22
RRM_1
AAA_19
AAA_30
RsgA_GTPase
Helicase_RecD
WH_Rok
ATPase
ABC_tran
nSTAND3
AAA_29
Motif
Other DBs
NCBI-GeneID:
128220225
NCBI-ProteinID:
XP_052784483
LinkDB
All DBs
Position
15:375794..387597
Genome browser
AA seq
1085 aa
AA seq
DB search
MQILSIHVTKMFEITGIRGKLMTKENIHRFFFVVCDEVSNERRFQDLLYHRIDRPKWLTL
EVKCVEKMVGSSEGCTLISASFESANTAKRAVNLLHSSNKVSSSKIHGFFSKEKALGENL
TNKRQAEFQRALEELIETTELVVDKHDAKIKQTENEMVEIDNDLHRGKQIPINQFDNLSS
KKSALDDKLQELQSQKGEFCKYIKAMKTKIEDIIQSDRFVNDLKEIRKALGVECRRLEAA
LPMYARREDIITTIRNNQVSVIIGETGSGKSTQMVQYLYQAGFGDKGLIACTQPRKIAAI
SLATHVSKELASSVGQIVGYQVGMQMKKTEITKVLYMTDHLLLNECLADRSLTKYSCVII
DEAHERSIHTDLLLGLLKQCMKTRPEFKVIVTSATIYPDIFVQYFGGPLNCPVLSVSGRA
FPVDVIWDHDEMNDSPYPNDFEKKALQKAIDIHTTTDVNSGDILVFLTSAIETTRCAERF
KQKCGDQTCICFPLHRRLKPEEQQLVFDPTQKGKRKVIFSTNIAETSITIDGIKYVIDTG
LAKEMRFDPKRNMSSLDVVSVSKSSANQRKGRAGRTAPGTCYRLYAQTDFSKMDKSGTPE
ILRIHVTQGILKLLQMKVNPVDFDYVQSPSEAAMKSAVEELMSIGAVDEDGITELGEWIV
RLPIEPRLGLMVKTGIDMGVPLESCVIATCCNQQVFFRAGSDEEKKLADMKKLEFCHIGG
DLLTMLSVYREWDKVNEKGKGKWCNANSVNGKSMKVVRDMVNEICTSLKRELDVKIQHEF
IEVAEAESRIGKLIFECMYSNLGYYLGHESAGYLIVNRNHRVQIHPSSALISLGLQPEWI
IFNKVLKTSSDFITEITPVPEQYIEEAEGSNKIKLNRTALANQRIERVCTIPIGKHVFWK
FVGPMHKDRKSLEANIQDVCNGSIVIIEANKRRGEIVLFAVSQYSEVALDILKENLKPLP
AQLLNERIEEALGKSGVRVVIKEGGEVADILMPDQYRACNIKENESGKYPIADDEVHSAL
SKYGPLEQIWQTTGPKSKSSIFWGKVTFANESDAKKAVTGVMKEDDRLFSLVPITFSAEH
QTNKV
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatactatcaatacacgtgacaaaaatgttcgaaataacgggaatacgaggaaaa
ctgatgacaaaagaaaacatacacaggtttttttttgtggtttgtgatgaagtttcaaat
gagcggagatttcaagatcttttatatcatcggatagatagaccgaagtggttgacctta
gaggttaaatgtgtggagaaaatggtaggatcaagcgaaggctgcaccttgatatcagcg
tcatttgaaagtgcaaacactgccaaaagagctgtgaatcttctgcacagttccaacaaa
gtctcgtcgagtaaaatacatggattctttagcaaggaaaaagctctaggtgagaacctg
acaaacaaacgtcaggctgaatttcaaagagctcttgaagaattgattgaaacaacagaa
ctagttgtggacaaacatgatgcaaaaattaagcaaacggaaaatgaaatggtggaaata
gacaacgatttgcatcgcggaaagcaaattccaatcaatcagtttgacaatctttcaagc
aagaagtcggctttggatgacaagttgcaggagctgcaatcacaaaaaggagagttttgt
aaatacatcaaagccatgaaaacaaaaattgaagatatcatacagagcgatagattcgtt
aatgatttaaaagaaattcgaaaggctcttggggtcgagtgccggcgtttagaagcagcc
ctaccgatgtatgcaagaagagaagacatcataacaactatacggaacaaccaagtttct
gtgatcattggcgaaacagggtcgggaaaatccacgcagatggtccagtacctgtaccaa
gcaggatttggagacaaaggccttattgcttgcactcagcctagaaagattgcagcaatc
agtctggcgacccatgtatccaaagaactagcctcaagcgttggacaaatcgttggctac
caagtaggcatgcagatgaagaaaacagagatcacaaaggttttgtacatgactgaccat
ttgttactgaatgaatgtttagcagataggtcgttgacaaagtactcttgtgtaattatc
gatgaggcccatgagagaagcattcacaccgatttgcttttaggacttcttaagcagtgt
atgaaaaccaggccggaattcaaagtcattgtgacttctgccaccatttacccagacata
tttgttcagtactttgggggaccacttaattgcccggttttgagtgtttccggtcgtgca
tttcccgtagatgtcatttgggatcatgacgaaatgaacgatagcccatatccaaacgat
tttgagaagaaagctcttcaaaaagccatcgacatccacacaacaactgatgtaaattct
ggggatatccttgtctttcttacatctgctattgagacaacacggtgtgcggaacgattc
aaacaaaaatgcggagaccaaacttgcatctgttttccgctacacagaagattaaagcca
gaggagcaacaacttgttttcgacccaactcagaagggaaagcgaaaggtcattttctcg
actaacattgctgagacttcaatcaccatagatggcattaagtatgtgatagacactggg
ctggcaaaagaaatgcgatttgatccaaaacggaacatgagttctctggacgttgtgtcg
gtaagcaagagctccgccaatcagcgtaaaggaagggcaggaagaactgcgccaggaaca
tgttacagactctatgcccaaacggacttcagcaaaatggataaatctggaacgcctgaa
atattacgtatccatgttactcaaggtattttgaaacttttgcaaatgaaggtaaatcct
gttgactttgattatgttcagtcaccctcagaagcggcaatgaaaagcgcagtcgaagag
ctaatgagtattggagctgttgacgaggatggaattactgagctaggagaatggatagtg
cgactccctattgaaccaaggcttgggttgatggttaaaacgggaattgatatgggagtt
cctcttgaatcgtgtgtcattgcaacttgttgcaatcaacaagtgtttttccgcgctggt
tcagatgaagagaaaaaactagctgatatgaagaagctagagttctgtcacattggaggt
gacttactgactatgttatcagtatatagagagtgggataaagtcaacgaaaagggaaag
ggcaaatggtgtaatgcaaatagtgtgaatggaaaatcaatgaaagtcgttcgggacatg
gtcaatgaaatatgtacatcactgaagagagagttggatgtgaaaattcagcatgagttt
attgaagtagctgaggccgagtcacgtataggaaagttgatttttgaatgcatgtactct
aacctaggttattatcttggtcatgaaagtgcaggatacctgattgtaaaccgcaatcac
agggtacagatacacccttcttcagccctgatttcgttaggccttcaacctgaatggata
atcttcaacaaagttttgaaaacctcttcagattttatcactgagataacgccagttcca
gaacaatacattgaggaggccgagggctcaaacaaaattaaactgaacagaacagcattg
gccaatcaacgtattgaacgggtatgcacaattccaattgggaaacatgtgttttggaag
tttgttggaccaatgcacaaggatcgaaagtcattagaagcgaacattcaagatgtttgc
aacggttccattgtgataattgaagcaaataaacggagaggtgaaatagtgttgtttgct
gtctcacaatattctgaggttgcgttggacatacttaaggaaaacctcaaaccattacca
gctcagctattgaacgaacgaatagaagaggccttgggcaaatcaggcgttagggtggtt
ataaaagaaggtggtgaggttgctgatatattgatgcctgatcaatacagagcctgtaac
atcaaggagaacgagtctggtaaatatcccatagcggatgacgaggtacacagcgcattg
tcaaagtacggaccactagagcagatatggcaaacaacaggaccgaagagcaaaagcagt
atattttggggaaaagttacatttgcaaatgaaagcgatgcgaagaaagctgtaactggc
gttatgaaagaagatgacaggttgttttctctcgttccaattactttttctgcagaacac
caaaccaacaaggtttaa
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