Mya arenaria (softshell): 128220479
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Entry
128220479 CDS
T09995
Name
(RefSeq) TPR and ankyrin repeat-containing protein 1-like isoform X1
Organism
maea
Mya arenaria (softshell)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
Clathrin
SRP_TPR_like
Motif
Other DBs
NCBI-GeneID:
128220479
NCBI-ProteinID:
XP_052784848
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All DBs
Position
15:13118643..13196215
Genome browser
AA seq
3024 aa
AA seq
DB search
MSYLGWRSRRGKVKSYNNTAELCFNLGLCYPPDACQINGFIQAYKASAKINLKVGYFKEA
TNCYTKALQGYELCHNDPTVAIKRHKLLCKRSSAYLGMKKFKESRRDAAQAVDLCPSDIK
GYWRYSEAVKGGYHGVQLAMPYLTEGLRRALDVNTVKQNDVVKFITEICALIPEAPRTEK
MRRILYDMCIPDEKDVQIWYKVIANLAAGRHWKGLGMVYGFYNNCPSSRIRELDIDWIGS
CRSVSLGTMLCDLQDIAVISWGEKLATYLIDNGASVDEIGQEMGIPTIHFVVKLSLRINS
THLLDNVLARLSGDKQNAQNADGNTALHILTILGKANTDIGLMVLESLLRCKCSATIVNK
DIKKPIDYLKEGDKAYALLLNTETDGQSAISSAVQEEPFLLGCEQVNRSVEGGSPIQAAT
LIVPEKEKLFLTKHQRKGDNSSSNLEELNDNSMSVFSIDSIHSPEKGASDCAGDIGKIGL
AGKTEACEDELGSEASALKDELGIEASAFRNELESISGANVVKKKSENELSGNSGIYIRN
VFKENPIPKGNDVTKQSVDSINTFDDSSDNDSFVSAFEELSNEDEGFEVNSNINLIKRNI
ACDNIVIKTDAEPENISEAGAVKVKWEDKRSRSSEIDHRKVFKEKHIAQENDATSTEERE
DSIDTLDESSDQDSFVSAFEENGSEGTEVINKGNVNESNIASDYIVIKTVDAVTEKGDHS
FAKEKAVDFVDKSEVKDDNKDEKQAGAVSERELKGNDRNEVVDEDIDVEEEQLVESVDDN
DDDDDDDDDDDDDDDDDVDQFIIDAKVFDNLEWEVECTAEVWKTLRDRRVTKELKQRIVH
KIQLLASGDWQPHLCKRLKNAPATINLFEAKFSKGRRIIWELAVAFSPRLSETAERRQHP
EQEEITQAVKGGRIYSEIIRVWDIVLDHDKIYRSVKRNKKSHQRGEDCVIQKNLRGMKFK
SPALALGVGKRYPMLYAEKGVSGEEVQKQHQVIRSLFPPASSNDTEHHIRKFYSFSSILV
SHVLHNIVTKVDFPFKVTELEQAIINLRSSAPILLIGRSGTGKTLCCLYRLWSQFHAYWM
KAREADAPLLPRCVESVNQSVSDILYDNQEEENDDDSNTSRYESEGATARTSTPDPGVEP
EDQEGEEDTFYVHLHQVFITKNAVLCNEMQKNFNELSHANEFMVEHVKHEGEALPSRLQD
VTDNGFPMFVTSRQLLLMLDASVGPPYFFDRNKDGSLKVEIAGWTGLDGPLSFLPLLHED
SDAEEYLEEEEVEEIRGGASGKKLKVDPRREITYTVFVEEIWPRIKDKAIYHPSLVWTEI
MSFIKGSFEALSKPNGCLEKEEYFKLGRKRAQYSSEEQDSIYAYFLKYEQFRKQNSLFDE
TDLVHDTVHRLYVLKRRPWVFHQIYVDETQDFTQAELRLLITLCQNPNDMFLTGDTAQSI
MRGISFRFSDLRSLFFHAKHSMGNTSAVEVPTQVYQLNTNYRSHAGILSLATSILELMAE
FFPESFDRLQPDQGLFSGPQPILLESCSFGDLAVLLRGNRRKTSDIQFGANQAVLVVNDA
ARDSIPEELRLGLVLTIYEAKGLEFDDVLLYNFFKDSEANKEWRVVTEYLERQLSQQTKT
GARNVYDNPVQIDKDILAAPNRPRPLKFNHNQHKVLNSELKRLYTALTRARVNVWIFDED
NVKRAPMFEYFKARKLVKALQVEEINEKRLSKIVFAEKSSPSDWLKRGKDFMRHSLYTVA
AKCFAMGGDHGQEALALANGQALKASKMKDNSRQMHDEFLCAAELYLECNKPAKAALCLQ
NAKEQKLAAEMFEKLGQFEKAAEIYRCIKQPRDSSRCYEKLGNFNKALDVLSENENYNMA
IDTLRRYSINIENLRQMGLSIPQQLIEPENHYTEENLSHRAAELYHKYNKEAKMMEAVEK
FQHVDDRVEFLLNRGYILQAAKIMESNGDLDGAAKVLLMHGWLEEAILTARKTSDKHIIA
TCLLVKCRHLSHQLQKSDTDLAALTSCFSAAAQEAADKFQACGDQDGLGCVLLLQADMSR
DDDYICKALQAFRRAKPFKNIAGSVACCDRLVKRQRLTYDENLKTVIKGIRQMFKVCIAL
VDPHASVNLERVRRIEQFYGLHPCSQDKVEIHLKERPLCLGMFKTKADKNKKKIEVKKTA
AHESVVEYLLKQTTVWLEPLWNKLNARRKQVMVCKNFSMGMKCKQSGNVDNPCNKLHRVQ
TKDDFQRMIELDLLMIEYEATVHSGAINFRKNCPVKLKPVVAEFIGDGERDFSWKYRAVT
KLWEDLMPKGGHPTLIDSNSKQLLDFIVRNDKVHGHLKRYFHDRWMKSVNGDVRLNCSAV
RETDVFLVFQMGFYMFNLDFGSGRLERTPDAEMSKLENELDREMSAKKVLAKFKGNLKSY
SLMMDTDKNGSINVQCIARRFADAYKHLIFYDPYEAVFKFGKFVNLLRGKINLDFHDIGL
YLMWMEFYVVLTFLVIAKFNSINVGNFCFVAPNNYISLLKFIGATLSSKASNKSTVEIVH
SWKPSYSQKNDGRMQERLKCIAFAVAGVCFGKFEMMRMLVERCQGEPTLYACIERLLILA
MTLVCNIDKTVLIENESSLMGMMCHANLPADAPARMHRSVRCLQECNGVADVAGVLMHLL
KVRGRGEEMLVCSWKGERNKDPLETVPVAASMDLFRSSFFKTEDTFNAMRLLNQAEQKIK
ENVEGMPEADGQLTEEELRQSHQEKQDQAQREREIWAATGIARWYRNIRDARMSKDVKKP
EIQAMLSAIKVDETHCGVCGVLYEDILKERLKLERSVVVGDDSVLNKTNVDGARKQRSLE
TAQNPWEKELDVKPISKKQRIQMMVGIHKAHTIQNSHSQKCQEFHRFKTGYNEVIEPQLK
KIREFVYDSGVGLDKPQYVEQHYKRHKMEIERMLRLIPQIEQEIHLQITSHHWAGAGLVR
QNLTELITDYQTVEPFVKDVHAKLKQEGEYDACKATTGLTRQGRVKSENDDVGDIEAVVE
EPSVPVRKQTRKQRRRKKQRFQNR
NT seq
9075 nt
NT seq
+upstream
nt +downstream
nt
atgtcatatcttggttggagaagcaggagaggaaaagtgaaaagctacaataacacggca
gagctctgcttcaacctgggtctatgttatccaccagatgcatgccagattaatggattc
attcaggcgtataaggccagtgctaagataaatctaaaagttgggtattttaaagaggca
acgaattgctacaccaaggccctgcagggttacgagctctgtcataatgaccctacagtg
gccatcaagaggcataagctactctgtaagaggtcttcagcttacctggggatgaaaaag
ttcaaggaatcgcgacgagatgcagcccaggcagtagatctttgtccatcagacataaag
ggttactggcgatatagcgaagcagtaaagggaggatatcatggcgtacaacttgccatg
ccgtacctgacagaaggtctgagacgcgcccttgacgtaaacacggtgaagcagaatgat
gttgtcaaattcatcacagagatctgtgctcttataccggaggcccctcgtacagagaaa
atgagaagaatattgtatgatatgtgcattccggatgagaaggacgtccaaatatggtat
aaagttatcgcgaatctggctgccggacgtcactggaaagggctcggaatggtgtatggc
ttttataacaactgcccatcaagtcggatacgcgaactggacattgattggatcggaagt
tgccggtcagtgagtttggggaccatgctgtgtgatctacaggacattgcagttatttca
tggggagaaaagttggcgacgtatctgattgacaatggggcttctgtggacgaaatcggc
caggaaatgggcataccgactatccactttgtggtcaaactgtcattgagaataaactct
acacatctgctggataacgttcttgccagattgagtggagacaaacagaacgcccagaac
gcggacggcaacacagctctccacatacttaccatattgggcaaggccaacacagacatt
ggtttgatggttctcgagagtttgctacgctgtaagtgcagtgccacaattgtgaacaag
gacatcaagaaaccgatagactatctaaaggagggggataaggcctacgccctactcctc
aatactgaaacagatggacaatcggctatcagttcagcggtacaggaagaaccttttctt
ttgggatgtgaacaagtcaatcgtagtgtcgaaggtggctctcccattcaggctgccact
ctcatcgtcccggaaaaggagaaattgttcctcacgaagcaccagcgtaagggggacaac
tcttcctccaatctcgaagagcttaatgacaactcaatgtcagttttcagtattgactcc
attcattctcctgagaaaggtgcaagtgattgtgctggagatattggaaaaattggttta
gctggtaagacagaggcttgtgaagatgagttaggaagcgaagctagtgctcttaaagat
gaactgggaattgaagcaagtgcctttagaaatgaactggaaagcataagtggagcaaat
gttgtgaaaaaaaagtcggagaatgaactgagtggtaattctggaatatatattagaaac
gtgttcaaagaaaaccctattcctaaaggaaatgatgttaccaaacagagtgttgacagt
attaacacatttgatgactcgtcagataatgatagttttgtgagtgcctttgaggaatta
agcaatgaagatgaaggctttgaagtaaatagcaacataaatcttattaaaagaaacatt
gcttgtgataatattgttattaagacagatgcagaaccggaaaacataagtgaagcaggt
gccgttaaagttaaatgggaagataaacggagtagaagttctgaaatcgatcatagaaaa
gtgtttaaagaaaaacatattgctcaagagaatgatgctacgtctaccgaagaaagagaa
gacagtattgacacacttgatgagtcgtcagatcaggacagttttgtaagtgcgtttgag
gaaaatggcagtgaaggcacggaagtgattaacaaagggaatgttaatgagagtaacatt
gctagtgattatattgttattaaaacagttgatgcagtaacggaaaagggagatcacagt
tttgctaaagaaaaagctgttgattttgtcgacaaatcagaagtaaaagacgataacaaa
gatgaaaaacaagctggtgctgtcagtgaacgagaactaaagggaaatgacagaaatgaa
gttgtagatgaagatatagacgtggaagaagagcaactcgttgaatctgttgatgacaat
gatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgtggatcag
tttattattgatgctaaggtatttgacaacttggaatgggaagttgagtgtacggctgaa
gtgtggaagacgttgcgagaccgacgcgtaaccaaggagctgaaacagcgcatcgtacac
aagatccagctactggctagcggggactggcaaccacatttgtgcaagagactgaaaaat
gcgcctgccacaattaacttgtttgaggcaaaattcagtaaaggaagaagaatcatctgg
gagctagctgtagccttctctccaaggctgagtgagacagcagagcgtcgtcaacatcca
gagcaagaagagataacacaggcagtgaagggaggaagaatctactctgaaatcatccgg
gtctgggacattgtactggaccatgacaaaatttacaggagtgtcaagcgtaataagaag
tcacatcagaggggtgaggattgtgtaatacaaaagaacctccggggaatgaagttcaag
tccccagctttagcccttggggtgggaaaacgctaccccatgttgtatgctgaaaaggga
gtttctggagaagaggttcagaaacaacatcaggtaatacggagccttttcccaccagcc
agttccaatgacacagagcaccacattcgcaagttctactctttctcatccatactcgtg
agccacgtgcttcacaacatagtgaccaaggtggatttcccgttcaaggtgaccgaactc
gaacaggctattatcaacttgaggtcaagcgctcccatattactgataggcaggagtggc
acaggaaagacgctttgctgtttgtaccgcctgtggagccagtttcacgcctactggatg
aaggcacgcgaggcagacgcaccgttactgccacgatgtgtagagtctgtaaaccagtca
gtctcggacatactctatgataatcaagaggaggaaaatgatgacgattccaacacaagc
agatatgagagtgaaggagctacggcaagaacaagtacaccggacccaggagttgagcca
gaggaccaggagggggaagaggacacattttatgtccatctacaccaggtcttcatcaca
aagaatgctgtcttatgtaatgagatgcagaaaaacttcaacgagctgagtcatgctaat
gagttcatggtagagcacgtgaagcatgagggcgaggcccttccttctagacttcaggat
gttacggacaatggtttcccgatgtttgtgacgtctagacagctgcttctgatgctggac
gcgtccgtgggacctccgtatttctttgacaggaacaaggatggtagtctgaaggtggaa
atagctggatggacaggcctagatggtcccctgagtttcctgcccctgcttcatgaggac
tcggacgcggaggaataccttgaagaagaagaggtagaggagattcgaggcggagccagt
ggaaagaaacttaaggttgatcctcgccgggagataacgtatactgtgtttgtggaggag
atctggcctcgcatcaaggataaggcaatctaccatccgtccctagtatggacagagatc
atgtcattcatcaagggttcctttgaggcgctgtccaaacccaatggctgccttgaaaaa
gaagaatatttcaaactaggtcgtaaacgagcccaatattcctctgaagaacaagactcc
atctacgcctacttcttgaaatatgaacaattcaggaagcagaactcgctatttgatgaa
accgacctggttcacgacacggtccatcgcctttatgtcttaaagaggcgtccatgggtt
ttccaccagatatatgtcgacgagactcaggattttacccaggcagaactgcgtctgctc
atcacactgtgtcagaatcctaacgacatgtttcttacgggtgatactgcccaaagtatc
atgcgaggcatctcatttcgatttagtgatcttcggtcgctcttctttcacgcaaaacac
tcaatgggcaatacttcagctgttgaggtcccaacgcaggtctaccagcttaacaccaac
taccgttcccatgccggtattctctccctggcaaccagtattctcgaactcatggctgag
ttcttccccgagtcgtttgatcgcctccaaccagaccaaggcttgttttccggtccccag
cctatactactggagtcgtgcagttttggggaccttgcagttctcctcagggggaatcgg
aggaagacgtcagatatccagttcggggccaatcaggctgttttggtggtgaatgatgca
gctagagactccataccagaagagctgagacttggccttgtgttgaccatttatgaggcc
aagggtctcgaatttgatgatgtactactgtacaactttttcaaagactcggaggcaaac
aaggaatggcgagtggttacggagtacctggagagacagctaagccagcagacaaaaact
ggagctcgaaatgtgtatgacaatcctgtgcagattgataaagacatcctagcagcccca
aacagaccacggcccctgaagtttaaccacaaccaacacaaggtgctcaactctgagctg
aagcgcttgtacacggcgttgacacgagcccgcgtgaacgtgtggatatttgacgaggac
aatgttaaacgtgcgcccatgtttgagtacttcaaagcccgcaagctggtgaaggcactg
caggtcgaggaaattaatgagaaaagactgtctaagatagtgtttgctgagaagtctagc
ccgtcagactggctgaaacgtggtaaagactttatgcgccattctctgtatactgtagcg
gccaaatgtttcgcaatgggtggggatcatggtcaggaggcattagccctcgccaatgga
caggcacttaaggcatccaaaatgaaggacaactcccgacaaatgcacgatgagtttcta
tgtgctgcagagctctaccttgagtgtaacaagcctgcgaaagctgccctctgtctacag
aatgccaaggaacagaaactggctgccgaaatgttcgagaaactgggacagtttgagaag
gctgcggagatctaccgatgcataaagcagcctcgtgacagcagccgctgttacgaaaag
ttagggaacttcaacaaggctctagatgtgctctcggagaatgaaaattataacatggca
atcgatacactgcgtcgatatagcataaacatcgagaatttgagacagatgggcttgtca
ataccccagcagctgattgagccggagaaccactatacagaagaaaatctcagtcacagg
gctgctgagctgtaccataagtacaacaaagaagccaagatgatggaagccgtggagaaa
ttccagcatgtggacgaccgtgtggagttccttcttaaccgtggatacatactgcaggct
gctaagataatggagtccaatggcgacctggatggagctgcgaaggtgttactgatgcac
ggttggttggaggaggccatattaacggcccggaaaacctctgacaagcatatcatagcc
acgtgcctgctcgtcaaatgccgccatctgtcccaccaacttcaaaaatcagacactgat
cttgctgctctcaccagctgcttcagcgcggcagcacaggaggcagcagataagttccag
gcttgtggagaccaggatggattgggatgtgtgttgcttctacaggcggatatgtcccgt
gacgatgactatatctgcaaggcactccaggctttcaggagagctaagccgtttaaaaac
atcgctggcagtgtggcctgttgtgacaggctggtaaaaaggcaacggttgacatatgat
gagaacctgaagacagtaattaaaggcattagacagatgttcaaagtgtgcatagctctg
gtagatccgcacgcatcagtcaacttggaaagagtgaggaggattgagcagttctatggc
ttacatccatgcagccaggataaagttgagattcaccttaaagaaaggccgctgtgtttg
ggtatgttcaaaactaaggcagataaaaacaagaaaaaaattgaggttaagaagactgct
gcccatgaatctgttgtagagtatttactaaagcagacgactgtgtggctggaaccattg
tggaacaagctgaatgcgagaaggaaacaagtcatggtatgtaaaaacttcagcatgggt
atgaaatgcaaacagagtggaaatgtggacaacccatgcaacaaactgcatagagtacag
acaaaagatgactttcagcgcatgattgaattggatttgttgatgatcgagtatgaggcg
acagtgcattctggagctataaactttcgaaagaactgtccagttaaactgaaaccagtt
gttgcggagttcatcggcgatggggagcgagatttcagctggaagtaccgggctgtgacg
aaactctgggaagatctgatgcccaaaggaggtcatcccaccttgatagattccaacagc
aagcagctactggacttcatagtgaggaatgacaaggttcatggacacttgaagaggtac
tttcatgataggtggatgaaatcggtcaatggggacgttagattgaattgttcagcggta
cgagagacggatgtgttcttggtcttccagatggggttctatatgttcaaccttgacttt
ggctcaggacgactcgaaaggacacccgatgctgagatgtcaaaactcgagaatgagtta
gacagagaaatgtctgcgaagaaggtacttgctaagttcaaaggaaacttgaaatcctac
tcgctgatgatggacacagacaagaatggaagcataaatgtccagtgcattgcaagaaga
tttgccgatgcctataaacatttgatcttttatgatccgtatgaggctgttttcaagttt
ggcaaatttgtgaatctgcttcgcggcaaaataaatttagatttccatgacattggccta
tacctcatgtggatggagttttatgtcgtcctgacatttcttgtgattgccaagttcaat
tccataaatgttggaaacttttgctttgtagctccaaacaactacatcagtctgctcaaa
ttcataggagccacgctatcctcaaaagcaagcaacaagtcgactgtagaaattgtacat
tcttggaagcctagctactcccaaaaaaatgatggccgtatgcaggagaggctgaagtgt
atagcatttgcagttgctggagtttgcttcggcaagtttgaaatgatgaggatgcttgtt
gagagatgtcaaggagagccgacattgtatgcatgtatagagagacttctgatactggcc
atgaccttggtatgcaacatcgataaaaccgtgctaattgagaatgaaagcagcctcatg
gggatgatgtgccatgcaaatttacctgctgatgcccctgcaagaatgcaccgaagtgtc
agatgcctgcaagaatgcaatggcgttgctgatgttgcaggtgtactgatgcaccttttg
aaggtccggggaagaggagaagagatgcttgtttgttcatggaagggcgaaaggaataaa
gaccctctagagacggttcctgtagctgcctcaatggacctgttccgatcctctttcttc
aagacagaggacactttcaatgcaatgcggctgctaaaccaggctgagcagaaaatcaag
gaaaatgtggagggaatgcccgaggctgatgggcaactgactgaggaagaattgaggcaa
agtcaccaagaaaaacaggatcaggcacaaagagagcgtgaaatctgggctgctacaggt
atcgctagatggtaccgtaatatcagggatgcacgcatgtctaaggatgtgaagaagccg
gagattcaggccatgctctctgctattaaagttgatgagacacactgtggggtatgtgga
gtcctctatgaagatattttgaaagagcgcctgaagttagaaaggtcggtagtcgtaggc
gatgattctgtgttaaacaaaacaaatgttgatggggcaagaaagcagcgcagtttggaa
acagcacaaaatccctgggaaaaagaattagatgtaaagcctatcagtaaaaaacagagg
atacaaatgatggtgggaatccataaggcacatacgatacagaattctcattcacagaag
tgtcaagaattccacagatttaagacaggctacaatgaagtcatagaaccacagctgaag
aaaattcgagaatttgtgtatgactctggtgttggactggataaaccacagtatgtggag
cagcattacaagagacacaaaatggagattgagcgcatgttacgattgataccccagatt
gaacaggaaattcacttgcaaatcacaagccatcattgggcgggagctggtcttgtaagg
caaaatctgacggaacttataacagactaccagacagtggagccttttgtgaaagatgtt
cacgctaaactgaaacaggagggagagtacgatgcctgcaaagcaactactggattgacc
aggcaaggtcgtgtcaagtcagaaaatgacgatgtaggggatatagaagctgttgtggag
gagccgtctgtgcccgtcaggaaacagacccgcaagcaacgcagaagaaaaaaacaacga
ttccaaaaccgatag
DBGET
integrated database retrieval system
