Mya arenaria (softshell): 128221076
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Entry
128221076 CDS
T09995
Name
(RefSeq) intermembrane lipid transfer protein VPS13A-like
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
maea04131
]
128221076
Membrane trafficking [BR:
maea04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
128221076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
BORCS6
Motif
Other DBs
NCBI-GeneID:
128221076
NCBI-ProteinID:
XP_052785478
LinkDB
All DBs
Position
16:complement(34392872..34508648)
Genome browser
AA seq
3225 aa
AA seq
DB search
MVFESIVVDLINKYLGDFVENLDKSQLKLGIWGGDVVLNELDLKESALDDLDLPVKIKAG
HIGKLTLKIPWKNLYTEPVIATIDGLYALAVPNVGIKYNAEKEEKEHQETKQKKLRALEE
AKKLEAEKDQPKEKKKDSFAEKFATQVIKNLQVEVRNIHVRYEDKYTNPKQPFSIGATLK
ELLFRTTDENWKPCIIKEAVSQIYKLVKLEQLAVYWNSHSTLYEDRPKADILKSLKSAIE
EGNKTNFQYLIRPISSVAHLRLNTKPEEQEFTVPKVSLTVIFDDISIGLAKVQYNDVLEM
LEGFERVNLMGIYRKYKPDVPFRGHTAAWWHFAYKSILEETVRRRRKMWSWEHIREHRDK
KNQYREAYIKKLESKKVASDLQKTLDECEAYLDVFNITVIRQQAEIESVKRGLKRAEEKK
NAGWFGGMFGGGKKKDEAKKKSDAEQIQEQFYEQFNSDEKKKLYDAIGYQENESDPTLPK
AFVALRIVTKLNNVSLTLKDDKIKEPQLLKLQLKNVYSTVGQRPAASAIRVEAKMDRLTV
LGTQQGDCIPRMVSSVVTDQVMSLVDFQFETNPLDGECDARVKVGARPVQIIYDAVTVNQ
LAGFFKPPKDIQLKQLSQAAMSKYEDIKEQTATGMQHAIDQQKYTEISVDLQSSYVIVPH
GGIWTKGRDVSKLILDLGHLKIGSERSQSDIKSKSQLGSLEDVMTKAYDKFNISLDNIQL
LMVHANEDWQAIRRLKDSPTHILCPISLNILLEKCMFDKDPRMARMKVKGELPLVSLNIS
DKRLQEVISLATSIPLPESEPEAPKDQFAEGPSTLPTVDITESRLAEKAQSMVATGDEGK
SPPARSESQEFVNCTDLELTFVLKQISLNIAQRKGDMDCPLLRLVVNDIGTGVKVRTFDM
VADAHLGSVYLQYLKAEVPEDLVEQLQKVGENLYTVTEGGPAINIVNTPQSVHGPSHLLN
VNYLKANTDAPDFATTYKKTEQTVNVDFASLELLLHQEAILDLLVFAQSLQTPEVKQLES
KTPQVKATADETEKSKELVKKKHVFKKDPDLIDMKLKAGLKMFSVAICSQKKMITDIRVK
GIEAEVTLQERQTQVSAVLKGISVQDPSPETFYPNILEIEGTEMLTLNLAIFNNNTEGER
YDDMNNVDMKVKVMIGKIKVTFLNKFVADLLAFADNFQEAQAKLKEASTAMAEITQDAVQ
NLQETASRLSLQVEMHAPLILMPQNSKCYDVLIVDLGHLQVKNNFEKLGQRAPSGIPAVL
EKMNVTLTNVKISRAKVDASQFVKAEVELLQPVTISVNICRNLSAAWYHDSPDIDISGTL
NLLQLCLSQGDFTAMMLTLNENLSEGQTKPAPKQETSETLAIESAGQEQAIVAEKSAGVQ
SAPAAPGSSTQVWCKLKFTFIVNSLGATLYSGDSNLTSGLVVRDASKLLGGFALDFFSLK
GRIMSNNDIDTAVKLKDMMMDDKRMQKQGGITKMMERSKKGGGKDMIDVSFKQAGDDKTI
DVHMSSLYVCVCLDFLMSVADFFVKGLPQTETPPPLAIEDQKAIKPKEVATQAPPPVGEM
NITVVIDRPEFIMIEDQARENTNALMLDMELKFQMRQSPETMDMSASIRNLGIVSCKYNN
RTGGAQILTPCDISFYSKTPHGEGAHMDVSTSDLILNISPGTIRTMSAIAAGLSQQSEEA
TAEEVVPADLWQFKRIQDCNFWFLKAGEGTSVDTEPLSLGTGVEEPLTERGEQLILKVPT
VVVKIEGGVGNRTVPLLITDMSFEGEVRDWTGKLSVESRLKLEVAYYNEKVSVWEPLLEP
VLHEGKYRRWELSLEVEKNEDVDLGLDEDEDTDNIRLPPPKMSINIKSTDSLNLTMTKAC
LESLTNLGKAFGDAYQLVEPTLRAGEVLDPFIIRNETGEDLMLKLDNTFEMPETAVNTKV
RLRSGDILPLKNKEAGNKLSRQASVIRATQNQDEKKMIFQVEKFDTPKELNIKRAEKRLF
HFTKSKDTDQWAVVADTSIHLGQKTLIFRSAVQVKNHLLLPVDVYYKDPSTGNVKLISHI
NPGQLYSLPLNTIYTTTSQFMFRPIKDGCVELSEPISWRGAENLGLKQLACKGDNVHQPF
YIKLRAEIEAVYYEGGEMPSAKSTVFHLYPTAIFHNLLPYDVKVMLEGTEDEMMLKKGCN
MPLDHACIGKTNMEVMISNYLDKDWHGRRVIDFDIPELSILSFESYQGKKKVTMDLGLHF
KKGEGSINVSVFSPYWMVNKTTLLLRYKAGDDEPMEHAPDVKDIIMFSFKKGSLFSKKKD
DLPEKKTGTLERKKEGKNKPKVKEMKQSGKASLCIGEGDWSDKFSLDVVGSSGTVQSKNK
NRTWEVGVSIILSSSGLTKVVTFTPFYMLVNSSPYTYQCKETITSSEWIEVPPKQCVPLW
PLQSGKEMKMQATVKDSDISTNHFLFNKPHSSLMRLDNNYGGINVEVQETESAMVTTFTN
YKDGLATVNVVNHTDKCDIQFFQSSVKNIQIMAAGMAGFYTWEDAIGKRELVWSCGEKKD
VKNDLSQDGIGEFFYNSDVKVYWVSFLSGMQRVLLFTHDLALATIAQEAGELERLEQEIT
VSLQDMGMSLVNNYTQKEVAFLGLTSSGFIWEEKRKRRHKAFTLKSNLALEQAYQKFDLE
KVSGRTPPEKINIDKMEVNFNEMMMFKPNKRQIRRSFQDGIWIQYKTSPHQVQFHAKINR
VQLDNQVAGAVFPTVLSPMPPPKSVAAESVPKPFTEVSMMLRKHEHTNISQMKYFKVLIQ
EMQLKVDQGFLNNIIDLFSSDQDITSEQEKQMLEEDIERTKQDLVTTMGLSLASEQKMFY
DYLHLSPIKVHLSFSLQGGGDGKAMQLHANVINVFLQSVGVVLTDIQDVVFKLGFFQREH
KFYNNKQLTGEMTSHYAGQAIKQMYVLVLGLDVLGNPFGLLRGMAEGIEDLFYEPYQGAI
QGPEEFAEGMMLGVKSLFGHAVGGAAGAVSRITGTLGKGIAALTLDDDYQKKRREALNKR
PANVGEGFARGGKGLVMGVFDGVTGIVRKPIEGAKKEGVEGFFKGVGKGLVGVVTRPTSG
VIDFASSSFEGIKRIAENVGEIHRLRPPRRFYKDAILRPYNKQEAEGCAVLIETEKGRYY
NTDEYVAHVVVTKDNKNVLLVTNKRVLFASRGEIFGSWNCEFTYTWTEIKEKPRVSAKGL
EIILKEKEKKGFFGSTSSKKDIHIADKKIAEWMVGKISDTWDAAN
NT seq
9678 nt
NT seq
+upstream
nt +downstream
nt
atggtgtttgaatcgatcgtggttgatttaatcaacaagtatctaggagattttgttgag
aacttggataaatcgcagctaaaacttgggatttggggaggtgatgttgttctcaatgag
ctggacctgaaagagagtgcccttgatgaccttgaccttccagtaaagatcaaagcaggc
cacataggaaagctgacattgaaaattccatggaagaacctttacacagagccagtgatt
gccaccatagacgggctctatgctctggcggtgcccaatgtcggaatcaagtacaatgcc
gagaaagaggagaaggaacaccaggagacgaaacagaaaaagttacgagccctggaagaa
gctaaaaaactggaggctgaaaaagaccaacctaaagagaagaaaaaagactcctttgcg
gagaagtttgctacacaagttatcaagaatcttcaggtggaggtgcgaaacatccatgta
cgttacgaggacaaatataccaaccctaaacaaccattctctattggtgccacattgaag
gaactcctgttcagaacgacagatgagaactggaaaccctgtatcatcaaggaagctgta
tcacagatatacaagttggtgaagctggagcagttggctgtctactggaacagccattct
acactgtatgaagacagacccaaggctgacattctgaaaagtctgaagagtgccatagaa
gagggcaataagaccaacttccagtacttgatcaggccaatttcatcagtggcccacctt
cgattgaacacaaaacctgaagaacaggaattcactgttccaaaggtgtccttgacagtc
atatttgatgacatctccatcggactagccaaggttcagtataatgatgtcctggagatg
ttggagggctttgagagagtcaatctgatgggtatctataggaaatacaagccagatgtc
ccctttagaggtcacacagctgcatggtggcattttgcatacaagagcatactagaagaa
actgtacgcagacgacgtaaaatgtggtcgtgggaacatattcgagaacatagggacaaa
aagaatcagtacagggaagcgtacattaagaaactggagagcaagaaagtggcgtctgac
ctgcagaagacacttgatgaatgtgaagcctacctagatgtattcaacatcacagtgatt
cgccaacaagccgagatagagagcgtaaaacgtgggcttaaacgtgctgaggagaagaaa
aacgcaggctggttcggcggaatgttcgggggcgggaagaagaaagatgaggcgaagaag
aagagtgatgcagaacagatacaggagcagttttatgagcagttcaactctgatgaaaag
aagaagttatatgatgccatcggctaccaggagaatgagtctgaccccactctgcccaaa
gcttttgtggccttgagaatagtgacaaagctgaacaatgtctccctcaccctgaaagat
gacaagataaaggagccccaattattaaaacttcagctgaagaatgtttacagcacggtg
ggtcagaggccagcagcttccgcaataagggtagaagctaaaatggaccgtctgacagtc
ctcggtacccagcaaggtgactgtattcccagaatggtttcttctgtggtcactgatcag
gtgatgtcactggtagatttccagtttgagacaaaccccctggatggggagtgtgacgcc
agagtgaaggttggggctcgtcctgtacagattatctatgacgctgtgacagtgaaccag
ttggcaggattcttcaaacctcctaaagatattcaactcaaacagctgtcgcaggcagcc
atgtcaaagtatgaagacatcaaggaacagactgccacaggaatgcagcatgccattgac
cagcaaaagtacacggagatatctgtggatcttcagtcttcatatgtgatagtaccgcat
ggtggaatatggaccaagggacgagatgtgtcaaagctgattctcgatctcggtcacctg
aagattggatcagagaggagccaatcagacatcaagagcaaaagtcaactggggtcactg
gaggatgtgatgaccaaggcttatgacaagttcaatatcagccttgacaatatacagctg
ctcatggtccatgcaaatgaggactggcaggctatccggagactgaaagactcccccacc
cacatcctgtgtcccatctccctgaacattctcctggaaaagtgtatgtttgacaaggac
ccaaggatggccaggatgaaggtaaaaggggagctacccttggtcagcctaaatatatcg
gacaagaggctacaggaagttatctcccttgctaccagtattcctctcccggagtcagaa
cctgaagcacccaaggaccaatttgctgagggtcctagtacgctacctacagttgacatc
acagaaagcaggctcgcagaaaaggctcaatccatggttgctactggtgacgaggggaaa
tccccgccggctcgcagtgaatcacaggagtttgttaactgtacagaccttgagctcacc
ttcgtgttgaaacagataagcttgaacatagcccaacgaaaaggtgacatggactgtccc
ctgttacgcctggttgtcaacgatatcgggacaggggtgaaggtcaggacatttgacatg
gttgctgatgcccatctgggaagtgtttacctgcagtaccttaaggcagaagttccagaa
gatttggtggaacaattgcagaaggttggagagaatttatacactgtgacagagggaggg
ccagccatcaacattgtgaacacaccacagagtgtacacggcccttcacacctactgaat
gtcaactacctcaaggcaaacactgatgccccagactttgctaccacatacaaaaagaca
gaacagacggtcaatgtggactttgcatctcttgagcttctcctgcaccaagaggcaata
ctggatctccttgtgtttgcacagtccctacagacccctgaagtgaagcaattggaaagc
aagacacctcaagtgaaggcgactgcagatgaaacagagaagtccaaggaactggtgaaa
aagaagcatgtgttcaagaaggatcctgacctgatagacatgaaactgaaggccggactg
aaaatgttctctgtggcgatctgctcccagaaaaaaatgatcacagatattagagtcaaa
ggtatcgaggctgaagtgactctacaagagcgtcaaacccaagtatcagctgtcctgaaa
ggcatttctgtacaggatccgagtccggagactttctaccctaatatcttagagatagag
ggaactgaaatgttgacattgaacctggcaatattcaacaacaacacagagggtgagaga
tatgatgatatgaacaacgtggatatgaaggtcaaggtcatgattggaaagatcaaggtc
accttcctcaacaagtttgtggctgatctactggcatttgccgacaacttccaagaagcc
caggccaagctgaaggaagccagtacagcaatggctgaaattacccaggatgctgtgcag
aatctgcaagaaacagcttcccgattgtctctccaagtggaaatgcatgctccattgatt
ctcatgccccagaattccaagtgttacgatgtgctgattgttgatttaggtcatttgcaa
gttaaaaataactttgagaaactgggtcaaagggcaccgtcagggataccagctgtccta
gagaaaatgaatgtgaccttgacaaatgtgaagatttcaagggccaaggtggatgccagc
cagtttgtgaaggcagaggtggaattactacaaccagtcaccatctctgtgaacatctgt
agaaacctgtccgcagcctggtaccatgactccccagatatagatatctctggaactctc
aacttgcttcagctgtgtttgagtcagggagacttcactgctatgatgttaaccctgaat
gagaacttgtcagagggccagacaaagccagcccctaaacaggaaacatcagagacccta
gccatagaatcagctggtcaggagcaggctattgtggctgagaaaagtgctggtgtacaa
agtgccccagcagcacctggctcatctactcaagtgtggtgtaaactcaagtttaccttc
attgtaaatagtctgggggccaccctgtactctggagatagtaacttgacttctggtcta
gttgttagagatgcatcgaagcttcttggaggatttgccctggatttcttctcgctaaag
ggtcgcatcatgtctaacaacgatattgatactgctgtcaaactgaaggacatgatgatg
gatgataaacgcatgcagaaacagggcggcattacaaagatgatggagcgcagcaagaaa
ggtggagggaaggacatgattgatgtatccttcaaacaggccggagacgataaaacaatt
gatgtccacatgtcaagcttgtatgtgtgtgtgtgcctggacttcctgatgtccgtggca
gactttttcgtgaagggactaccccagacagaaaccccaccccctctcgcaatagaggat
caaaaagctataaagcccaaagaggtcgccacccaagccccaccccctgtgggcgagatg
aatatcaccgtggtgatagaccggccagagttcatcatgatagaggaccaggccagggaa
aataccaacgcccttatgcttgatatggagctgaagttccagatgcgacagagcccagag
acaatggacatgtctgccagcatccggaacttgggcattgtatcctgtaaatacaacaat
aggaccggaggggctcagatccttaccccgtgtgacatatcgttctacagtaagaccccc
catggggagggggcacatatggatgtgtcgacgtcagatctcatcctaaatatctcacct
ggaaccatcaggacgatgtcagctatagctgctggcctctcccagcaaagtgaggaggct
acagcggaagaagtggtaccagctgacctgtggcagttcaagaggatacaggactgtaac
ttctggttcctcaaggccggcgagggaacttcagttgacacagagccattaagcttggga
actggtgtggaggaaccacttacagagaggggagaacagctgatcctgaaagtgccgaca
gttgtggtgaagattgaaggaggcgttggcaacagaactgtgcctctgctgataactgac
atgtcatttgagggcgaagttagggattggacaggaaagctgtctgtggagagcaggctg
aaactggaggtggcctactacaatgagaaggtgtcagtctgggagccgttgttggaacca
gtcttacatgagggcaaatacaggagatgggagctatccctagaggtggagaaaaatgaa
gatgtggacctgggtctggatgaagatgaggacacggacaatatccgcctaccacctccg
aaaatgagcatcaatatcaagtctacagactccctgaatctgaccatgacaaaagcatgc
ctggaaagcctcaccaacctgggaaaggcatttggtgatgcctaccaactggttgagccc
acgctgagggcaggagaagtgttggaccctttcatcatacgtaacgagactggcgaagac
ctaatgctgaaactggacaatacctttgagatgccagaaacagcagtaaataccaaggtg
agactaaggtctggtgacattctaccactcaagaacaaggaagcaggaaacaaactcagc
aggcaggcatctgtcatccgggcaactcaaaaccaggatgagaagaaaatgatcttccag
gttgagaaatttgacaccccgaaagaactgaacatcaagagggcagagaagaggctgttc
cacttcaccaagtcgaaggacactgaccagtgggcagtggtggcagacaccagtatacac
ctgggacagaaaacactcatattcagatcagctgtgcaggtgaaaaaccatctgctcttg
ccagtggatgtctactacaaagatccaagcactgggaacgtgaagctgatctcacacatc
aacccgggacaactatacagtctcccccttaacacaatatacaccaccactagccagttc
atgttcagaccaataaaagatgggtgtgttgagctgagtgagccaatttcctggagaggg
gctgaaaatcttggcctgaaacagctggcctgtaagggagacaacgtgcaccaaccattc
tatatcaagctgagagctgaaatagaggctgtttactatgagggaggagaaatgccatcg
gccaagagcacagtgtttcacctctatcccactgctatattccataatctgctgccgtac
gatgtcaaggtcatgttagagggcacagaagatgagatgatgttaaagaagggatgtaat
atgcctctggatcacgcctgtattggtaaaaccaacatggaggtcatgatatcaaactac
cttgataaggattggcacggacgcagggtcatagactttgacatcccggaactgtcaatt
ttgagttttgagagctaccaagggaagaagaaagttaccatggacctaggcctacacttt
aagaaaggagagggttctatcaatgtgtctgtgttcagcccatactggatggtaaacaag
actaccctgctcctcagatataaggctggagacgacgagccaatggaacacgcccctgat
gtcaaggatattatcatgttctcattcaagaagggatctctcttcagcaagaaaaaggat
gacttgccagagaaaaagaccggcaccttggaacgaaagaaggaaggaaaaaataagccg
aaagtgaaagaaatgaagcagagtgggaaagcatccctatgtattggagaaggtgattgg
tcagacaagttctctctggatgttgtaggcagctctggaactgtgcagagcaagaacaaa
aaccggacctgggaggtgggagtcagcataatcctctccagttcaggcctgacaaaagtg
gtgacattcacccccttctacatgctagtcaactcttccccttacacttaccagtgcaag
gaaactataacaagcagtgaatggattgaagtgccacccaaacagtgtgtgccactgtgg
cccctgcaatcaggcaaggagatgaagatgcaggcaaccgtgaaagattctgacatctca
accaatcatttcctctttaacaaaccacactcttcactcatgcgattggacaataattat
ggtgggataaatgtggaggttcaggagactgagagcgccatggtaacgactttcaccaac
tacaaggacggtctggcaacagtcaacgttgtgaatcataccgacaagtgtgatatacag
ttctttcaaagttcagtgaagaatatacaaattatggccgctggcatggctgggttctat
acctgggaggatgctataggcaaaagagagctggtctggagttgtggggagaagaaagac
gtgaaaaatgacctctcacaggatggtataggggagtttttctacaactctgacgtgaag
gtgtactgggtctccttcctgtccgggatgcagagggtgcttctcttcactcatgacctg
gccctggctacaattgcgcaggaggcgggtgagttggagcggttggagcaagaaataaca
gtgagcctacaagatatgggaatgtcactggtgaacaactatacacagaaggaggttgcc
ttcctcgggttaaccagctctggtttcatttgggaagagaaaagaaaaaggcgacacaaa
gcattcactttaaaatcaaacctggccttggagcaagcatatcagaagtttgaccttgaa
aaagtcagtggaagaacgccaccggaaaaaatcaacattgacaagatggaggtgaatttc
aatgagatgatgatgttcaaaccaaataagagacagatacggagaagtttccaggatggg
atctggatccagtataagacttcccctcatcaggtccagttccacgcaaaaatcaacagg
gttcagctagacaaccaggtagctggtgctgtgttccctaccgtgctgtcacctatgcct
ccaccaaaatctgtggctgctgaaagtgtgcccaagccattcacggaagtgagcatgatg
ctacgaaaacatgaacacacaaacatctcccagatgaagtacttcaaggtgctgatccag
gagatgcagctcaaggtggaccagggtttcctcaacaacatcatagacctgttctcctcc
gaccaggatatcaccagtgaacaagagaagcaaatgttggaagaagacatagagagaaca
aagcaagacctggtgacaaccatggggctgtccctggccagtgaacagaagatgttctat
gactatctacatctctctcctataaaggtgcacctgagtttctccctgcaaggaggtggt
gatggcaaggccatgcagctacacgccaacgtgatcaacgtgttcctacagagtgtgggc
gtcgtccttactgatatacaggatgttgtcttcaaacttggcttcttccagagagaacac
aagttctacaacaacaaacaactgaccggggaaatgaccagccactatgctggacaggcg
attaagcaaatgtatgtccttgtgctgggactggatgtgctgggaaatccatttgggtta
ctgagaggaatggccgagggcattgaggacctcttctatgagccataccagggagccatc
cagggtccagaggagtttgctgaggggatgatgctgggggtgaagagtttgtttggacac
gctgtcggaggagcagcaggtgcagtgtccagaatcactggaactctcggcaagggcata
gcggccttgaccttggatgacgactaccagaagaagagacgggaggcactcaacaagaga
cctgctaatgtaggcgagggctttgctaggggagggaaaggacttgttatgggagtcttt
gacggagttacagggattgttcgcaagcctatcgaaggggctaagaaggagggagtggaa
gggtttttcaagggggttggcaaggggctggtaggggttgttaccaggccaaccagtggg
gtcattgacttcgctagcagctcgtttgagggaataaaaaggattgctgagaatgttggt
gagatacacagactgcgtcccccgcgtagattctacaaggacgcgattctccgtccatac
aacaagcaggaggcagagggatgtgctgtactcatagagacagagaaaggccgatactac
aacacagatgaatatgtagcccacgtggtggttaccaaggacaacaagaatgtcctctta
gttaccaacaagcgtgtattatttgctagtcgtggggagatatttggctcctggaactgc
gagttcacctatacgtggacggagataaaggagaaaccccgggtctctgccaaggggctg
gaaatcatcctcaaagagaaggagaagaagggattctttggctccaccagctcaaagaaa
gacatacatattgccgacaagaaaatagccgagtggatggttggaaaaatctcagacacc
tgggatgcggcaaattaa
DBGET
integrated database retrieval system
