Mya arenaria (softshell): 128221142
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Entry
128221142 CDS
T09995
Name
(RefSeq) cartilage intermediate layer protein 1-like isoform X1
KO
K24436
cartilage intermediate layer protein
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
maea04990
]
128221142
Domain-containing proteins not elsewhere classified [BR:
maea04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
128221142
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
TSP_1
Ig_3
CILP_C
TSP1_spondin
CILP
CILP_5th
Ig_2
I-set
TSP1_ADAMTS
Ig_5
CILP_8th
TSP1_CCN
V-set
TSP1_CFP_C
FAM171A1-2-B_N
Motif
Other DBs
NCBI-GeneID:
128221142
NCBI-ProteinID:
XP_052785557
LinkDB
All DBs
Position
16:complement(5963386..5971717)
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AA seq
1256 aa
AA seq
DB search
MGTFHLTICLCAVFILFGNDVLGQKAISVDVVLLLDSTDNGRSHNFDEEKRFASAVTERL
FDPNVRIGLFTFGQNTYSQFTLDMYSNIRDMKQAILYMWYSTGNGPLEKAINTTIYEAFK
TTNGDRICVSNTLLILSHSGFANATLNEETVKAIERKKVQVFVINMAGQNARDSFVDLTK
NESRVVDASNWNELQSVSTKVSELLLSDVGSTGCGRLTQWESWTGCSRTCGHGFTFRTRQ
CHKDDPLDQDCDGEMSEHKECFLTDCTEPVEGKWAFWGDWGSCSKTCGTGSQQRTRTCTQ
PAPANGGKVCTGNSTQTRLCADYKCPDCNATCPAGAHRSQDCKLCECSSLTLYGQALNDN
NETVKNAGIYLESSMYSPLATTDEFGLFEISGVCLMNERVFITAEHCADAHITPIEVNAT
HWTLPNFRLEVYVPPVFNVLPEAKIRMAGQNLVLCCKANGKPSPSNYKWYKDEMELGNVG
MNGTLAIEDAKIEDSGKYKCSTETDAGISQSHNIDVTITANASDTCGMPLSKLETLPTGC
VAESNNATVVDVRTCGSVNCMTSTLHDNGSCSDYWPHHCCSAKDVQQVRILCEGFSYITT
TITSCECKQCFFKSVVTGRAFGRIDGIEVPLQLGEIIINGKIFAQTSMAGFFKFELSKGI
RRIVATFHDETFKKFADVTKIIQIKEGSTTFATIVVPPKPTPLPFHADNGTEIHLGGSAD
LPPAAKLAIQPNSIVTPDGKPFKGKVQAALHFVDPRKRNDIEAANGEFESEAPDGSKVPL
KTFGMFQLGMTDENGTDLSVNKPLKFSLDASLFDVPVDENGDPLLALWTYDSNKGTWVEI
AKMRKEITNIGGRKLLGAGTYVVDYHPRDIPRLSQFNERVERKIIGYTNCDHSVPIYETT
VIREPRAGACFVSVSVYTDLSLKEAYDGGDVAINTYVQDPHTLTYLGYTSTIVLKNGHAC
IPIFCQKRVYIHVVRNSKERFYTGKHFLPHPGVISQTKDNEILFVSNDFGSQFDKSSYDP
NTIFKGPVFQLKDENMCGRLKATDKHFTFKFAPFTKSPTLHFANGPLNFNKKLAWYPMAP
SSTTFRSCYMKVLIKMNNTYGLRVIAKSYLEHAKGDEFGSHDVGPNPDPKTDNKYVRGAC
FEFRCPGLIHIGDTKLTNLSTAVEVRLVGLENKTCQIRNNHVGSDVQPIQQTGKGAVGFT
FIAEAGNNYGPKYGVFVADKPAKETEQYCNSGVDSGSQLDGIMNPLHNPAVEFECS
NT seq
3771 nt
NT seq
+upstream
nt +downstream
nt
atgggaacgtttcacctcactatttgtctatgtgctgttttcattttgtttgggaatgat
gtgttgggacaaaaagcaatttctgtagatgttgttcttcttttggattcaactgataat
ggacgatcgcacaattttgatgaagagaagagatttgcatcagcggtcacagagaggtta
tttgatcctaatgttcgcattggtctgttcacgtttggccaaaatacatatagccagttt
actctcgacatgtactcgaatattcgtgatatgaaacaagccattctgtatatgtggtat
agtactggaaatggcccactcgaaaaagcaataaacaccacgatatatgaagcttttaag
actacgaatggagacagaatttgcgtctcaaataccctattaatcctttcgcactctggg
tttgcaaatgcaactcttaatgaagaaaccgtgaaggcaattgaacggaaaaaagttcaa
gtttttgtcattaacatggcgggccaaaatgcacgagacagctttgtagatcttactaaa
aatgaatcgagagttgttgatgcgtctaattggaatgaactgcaaagcgtttcaaccaaa
gttagcgaactattattatctgacgtcggcagtactggctgcggtcgtctaacacaatgg
gagtcatggacgggctgcagcagaacatgtggacatggtttcacctttcgaacacgtcag
tgccataaggatgatccattagaccaagactgtgacggggaaatgtcggaacataaagaa
tgctttctaactgactgcacagagccggtagagggtaaatgggctttctggggtgattgg
ggctcatgttcaaagacatgtgggacagggtcccagcagagaactcgcacatgtacgcag
ccagcgcctgctaacggcggtaaagtctgtaccggaaactcgacgcaaacgagattatgt
gctgactacaaatgtccagattgcaatgcaacgtgtccggctggagcacatagatcgcaa
gactgcaaactttgcgagtgttcaagcttgacactctatggccaggccttgaatgacaat
aacgaaaccgtgaaaaatgctggtatttatttagaatctagtatgtacagcccgctcgcg
acaacggatgagtttggtttgtttgaaataagcggtgtgtgcttgatgaacgagagggtg
ttcataacagccgaacattgcgctgatgcccatattaccccaatagaagtcaacgctacg
cactggacgcttcctaatttcaggcttgaagtttacgttccaccagtgtttaatgtgctt
cctgaggcaaaaataaggatggctggacaaaacctggttttatgttgcaaagcgaatggg
aaaccctcgccttctaattacaaatggtacaaagacgaaatggaacttggcaacgttgga
atgaatggaacacttgctattgaagatgcaaagatagaagactcggggaaatataaatgc
agtacagagactgacgctggaatttcgcagtctcataacatcgatgttactataacagcc
aacgcatccgatacttgcggcatgcctctttccaaacttgaaactttacctaccggatgc
gtcgccgaaagtaacaatgctactgttgttgatgtcaggacgtgtggaagtgttaactgc
atgacatctacattgcacgataatggctcctgtagcgattactggccacatcattgttgt
tctgctaaggatgttcaacaagtacgaatcttatgtgaaggattcagttacataacgaca
accataacctcatgcgagtgtaaacaatgcttttttaagtcggttgttactggaagggcg
tttggaagaatagatggcatagaggttccactgcaactcggtgaaatcatcatcaatggg
aaaatatttgctcaaacgtcaatggccggcttttttaagttcgaactttcgaaaggcata
cgtcgaatagtcgcaacatttcatgatgagacttttaaaaagtttgctgatgttacaaaa
ataatacaaattaaggaaggatctactacatttgccacaattgtcgttccaccgaaacca
actcctcttccatttcatgcagacaacggtactgagatacatcttggaggaagtgctgac
ttgcctcctgcagcaaaactggcaatccagccaaattccattgtcacccctgatgggaaa
ccgttcaaaggaaaagttcaggcagcattacactttgttgatccacgaaaacgaaacgac
attgaagcggctaatggtgaatttgaaagtgaagctcctgatggcagtaaggttcccctg
aagacatttggaatgttccagcttggcatgacagacgaaaatggaacagacctctcagtt
aataaaccacttaagttttcactcgacgcttccttatttgatgtgccggtagacgaaaac
ggtgatccgttattggcattgtggacatatgatagtaataagggtacttgggttgaaatt
gcaaaaatgcgaaaggaaattacaaatatcggaggaagaaaactgttgggagctggaacg
tatgttgttgactatcaccctcgcgatataccgcgtctgtctcaatttaatgaaagagtt
gaacgcaagattattggatatacaaattgtgatcatagtgtgccaatatatgaaacaaca
gttattcgagaaccaagagcgggggcttgttttgtatcggtttcagtctatacagatttg
tcattaaaagaggcttacgacggaggggatgtggcaattaatacatacgtacaagatccg
catacccttacgtatcttggatacacatctacaatagttctaaaaaatggccatgcttgt
attcctatcttttgtcaaaaaagagtgtatatccatgttgttaggaattccaaggagcgt
ttctatacaggaaaacactttttgcctcacccaggcgtgatttcccaaactaaagataac
gaaatactcttcgtttcaaatgactttggatctcaatttgacaagagttcctacgatcca
aacacaattttcaaagggccagtgtttcaactgaaagatgaaaatatgtgtggacgttta
aaagcaacggataagcactttaccttcaaatttgcaccatttaccaagtcaccaacattg
catttcgcaaacggtcctttaaacttcaacaagaaactagcctggtatcctatggcgcca
tcctcaacaactttccgaagctgttacatgaaagttctcataaagatgaacaacacctac
ggtttgagagtaattgcaaaaagttacttggaacacgcaaaaggagatgaatttggatca
cacgatgttggtcctaatcctgaccctaaaactgacaacaaatatgtgagaggagcctgt
tttgaatttcgatgcccaggacttattcacatcggcgatacgaagctcacaaacttgtct
acagcggtggaagtgaggctcgtcggtttggaaaataaaacttgtcaaatcagaaacaat
cacgtgggctctgatgtccagccgattcagcagacagggaaaggcgctgtagggttcacg
tttattgccgaagccggtaataactatggtccgaaatacggcgtgttcgtggcagataaa
ccagcgaaagaaacggaacaatattgcaacagtggcgtagattctggcagccagttggat
gggattatgaatcccctacataatcctgcggttgaatttgaatgttcttaa
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