KEGG   Mya arenaria (softshell): 128221817
Entry
128221817         CDS       T09995                                 
Name
(RefSeq) SKI8 subunit of superkiller complex protein-like isoform X1
  KO
K12602  WD repeat-containing protein 61
Organism
maea  Mya arenaria (softshell)
Pathway
maea03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:maea00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    128221817
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:maea03019]
    128221817
Messenger RNA biogenesis [BR:maea03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     128221817
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WDR55 EIF3I ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_ACSF4 Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_NWD2_C Beta-prop_Nup120_160 Beta-prop_VPS8 Beta-prop_SCAP NBCH_WD40 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_Vps41 RMC1_N eIF2A Beta-prop_SPT8 Beta-prop_NUP159_NUP214 Beta-prop_HPS5 Tricorn_2nd WD_LRWD1 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Cytochrom_D1 Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_LRRK2 Beta-prop_RIG_1st WDR54 Beta-prop_DCAF12 PROPPIN Peptidase_S9_N
Other DBs
NCBI-GeneID: 128221817
NCBI-ProteinID: XP_052786378
LinkDB
Position
16:47513909..47550005
AA seq 307 aa
MAGSALYSIIHKQENAHDDSIWSCAMGRSNKDNVENIVTGSIDDKVKVWKWVDEKLELRH
LLEGHQLGVVSVDINGEGTLAASSSLDSHVRVWDLETGKCAKSIDAGPVDAWTVAFSPDS
RFLASGSHHGKINLFGVDSGRKESSLDTRGKLTLSIAYSPDGKFIACGAIDGIVNVFDIA
TGKLIHTLEGHAKPIRSLCFSPDSQLLVTGSDDNQIKIYDVLHANLAGTLSGHASWVLSV
AFSPDNTHFVSSSSDKSVKIWNAGTRQCVHTFYDHTDQVWGARYNQAGTRIVSVSDDRAV
HIYDIPQ
NT seq 924 nt   +upstreamnt  +downstreamnt
atggcgggcagtgctctgtattccataattcacaagcaggaaaatgctcatgatgacagt
atctggagctgcgcgatgggcagaagtaacaaagacaatgtagaaaacattgttacaggc
agcatagatgataaagtcaaagtctggaagtgggtggatgaaaagttggagttacggcac
ctgttagaaggtcaccagctaggtgtcgtctccgtggatatcaacggagaaggaacattg
gcagcttctagcagtcttgacagccatgtgagagtctgggacctggagactggaaaatgt
gccaaaagtatagatgctggaccagtggatgcatggacagttgccttttctcccgattcc
cggttcctggcgtcaggtagccaccatggtaaaatcaacttgtttggagtagactctggc
agaaaggaatcgtccttggataccaggggaaaactaacactcagtattgcatatagccca
gatggcaagtttatagcctgtggagctattgatggcattgtaaacgtgtttgatatcgct
acagggaaactcatacacactttggaaggtcatgctaagccaatcagatcgctctgtttt
tcccctgactcccagctgttggttaccggctcagatgacaaccaaataaagatttatgat
gtgctacatgctaatctagcggggacattatccggccatgcctcctgggtgctcagtgta
gctttctccccggataatacacattttgtctccagttcgtcggacaagagtgtgaaaatc
tggaatgcgggaacaagacaatgcgtacacacattctacgatcacaccgaccaggtttgg
ggcgcgcggtacaaccaggcaggcaccagaatagtgtcagtgtcagacgacagagctgta
catatatatgacatacctcagtga

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