Mya arenaria (softshell): 128222057
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Entry
128222057 CDS
T09995
Name
(RefSeq) uncharacterized protein LOC128222057 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128222057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128222057
Enzymes [BR:
maea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
128222057
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128222057
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128222057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
DUF3258
Motif
Other DBs
NCBI-GeneID:
128222057
NCBI-ProteinID:
XP_052786788
LinkDB
All DBs
Position
2:complement(21933660..22021752)
Genome browser
AA seq
932 aa
AA seq
DB search
MQKVLPVKQALVSANTEIIREEEYAGTSTSLYAESVPACKKCLQERTGSRHYKNTNMNNN
KKGKRKQNRANTPIVIQLKDTLKAAIQQKQKSRRNLLQKQESSEIREDIDIETDNSSDRS
EVTYNHNRKNNRRKNSKNFNSAFINVVEKQHRKSYTPYNVHTNYCFQNPCNEKLVAEYVL
NNVSEAHIPHKVFHKKNIEECENVDVICNDLTSVESTQEDTEESEISSTTSSSEIQSDSD
ISTAQEGREAPVASQEFTPEELQQLAEYTTGYPLVRYECPPDSCPQCQWYSSYAYSDSRA
ATGYEPYTAQSKPLHRTGRRNKSKKFAQQHQKVPLHKVTATVEIDNISNTESDYDVSEVT
DSVSETSVDTDSHCDNASPVFKGKSFRWGEKRTKTSHKQLLDIDIAGKNRKSHYTNVQSD
FCLDSVFIDLTDTDVTFSVYYHHNFTDIQSPYSSSLATTRTTSESVIGSHHHDYMPCYSV
PYYQQYMYWSPYYTPMYTVPMPFCLEPEDNLPKTAMVPPDYLPTFSSTQPPQRQWIPLAR
PEAGRPAAIFTVMCYNVLCDKYCTRQQYGYCPSWGLNWEYRKKGIMDEIRTCAADIIGLQ
EVETDQFYNFFKPELERDGYQGIFSPKSRARTMTEQERKHVDGCAIFFRTSKFTLLKEHL
IEFNQLAMANAEGSDEMLNRVMTKDNIGLAALLQTREGVFDSSGGLPPEGKINQRLLITT
AHMHWDPEFSDVKLIQTMMLMSELKKVVEESNASIQSTEQGDCNSIPIILCGDLNSLPES
GVIEYLQTGKVPSNHIDFKELGYEASLQAFNCHDTSTHLTHMFRLAKAYEDNIMKYTNYT
FEFKGIIDYIFYSRKYMNLLGVLGPMDENWFIENKVVGCPHPHIPSDHFSLFVEFEMPVP
YPDINTILKEDSHKPSSLGAIGSGVHRENKNR
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaagtgttacctgtgaagcaggctttggtaagcgccaacacagaaattattcga
gaagaggaatatgccgggacgtcaacaagcctgtatgcagagtccgtccctgcatgcaag
aaatgccttcaagaacgtacaggtagtcgtcactataaaaacaccaacatgaataataat
aaaaaagggaagcgaaaacagaaccgagcaaatactcccatagtaattcagctgaaagat
actcttaaagcagccattcagcaaaaacagaaaagtcgtagaaatttgcttcaaaagcaa
gaatcaagtgagattagggaagacattgacattgaaactgataacagctctgatcgtagt
gaggtgacctataatcacaacaggaaaaataacaggcgcaaaaattccaaaaactttaat
agtgcctttatcaatgttgttgaaaagcaacacaggaaaagttatactccttacaatgtg
catactaactattgtttccaaaatccatgtaatgaaaaactagttgcagagtatgtacta
aacaatgtgagtgaagctcatataccacacaaagtttttcacaagaaaaacatagaggag
tgtgagaatgtggatgtcatatgtaatgacctaactagtgtagaatccacacaggaggat
acagaggagagcgagatttcgtcaaccacatccagctcagaaatccagtctgattctgac
atttctactgcccaggaggggagagaagctccggtggcaagccaggaatttacaccggag
gagcttcaacagcttgctgagtacacaacaggttacccgcttgtccggtatgaatgccca
ccggacagctgtccccagtgtcagtggtacagtagttacgcctacagtgattccagggct
gctacgggctatgagccctacactgctcaatccaagcctctgcatcgaactgggaggaga
aataaatccaagaagtttgctcaacaacaccagaaggtgcctttgcacaaagtgacagct
actgttgaaattgacaacatatcaaacacggagagtgattatgatgtaagtgaggtgaca
gactcagtctcggagacctcagttgataccgacagtcactgtgacaatgcctctccagtt
ttcaaagggaaatcgttccgctggggggagaaaaggaccaagacatctcacaaacagctg
cttgatattgacattgcaggcaagaacaggaaatctcattacaccaatgttcaaagtgac
ttctgtttggactcagtgtttatagaccttacagatacagatgttacatttagtgtttat
taccaccacaactttacagacattcagtccccttattcatcaagcttggcaacaacgcgt
acaacatcagagtcggtaattggtagccatcatcatgactacatgccatgttattcagta
ccgtactaccaacagtacatgtactggtctccgtattacacacctatgtacacggtgccg
atgccattttgtcttgaaccagaggataatctaccaaagacagcaatggtccccccagat
tacctccccacattctcatcaacgcagcctccacagcgacaatggatccccctggcacgg
ccggaggctggcagacccgcagcgatcttcactgtgatgtgttacaatgtcctgtgtgac
aagtactgtacacggcagcaatatggctactgcccgtcatggggcctgaactgggagtac
cgcaagaagggcataatggacgagattcgcacttgtgctgccgacatcattggccttcag
gaggtggagacagaccagttctacaatttcttcaagccagagcttgagcgtgatgggtac
cagggaatcttctcgcccaaatcacgcgcccgcactatgactgagcaggagaggaaacac
gtcgacggctgtgccatcttctttagaacgtccaagtttaccctcttgaaggagcatttg
attgagttcaaccagctggcaatggccaatgcagagggttcagatgagatgttgaatcgg
gtcatgaccaaggacaacatcggcctcgctgccctgctccagacacgcgagggagtcttc
gacagcagtggtggtttgccaccggaggggaagataaaccagcgtctgctgatcacaacg
gcccacatgcactgggacccagagttctcggacgtgaagctcatccagaccatgatgctc
atgtctgagctgaagaaggtcgtagaggagagtaacgcatccatccagtccactgagcaa
ggcgactgtaattccattcctatcatcctctgtggtgatctcaactcccttcctgagtca
ggtgtgatagagtacctgcagacagggaaggttcctagcaaccacattgacttcaaggag
cttggttacgaggccagtctccaggccttcaactgtcacgacacatccacacatcttaca
catatgttccgccttgctaaggcatacgaggacaacataatgaaatacactaattacacg
tttgagtttaagggtattatcgactacatcttctactctcgcaaatacatgaacctgctt
ggtgtacttgggcctatggatgagaactggtttattgagaacaaggttgttggctgccca
cacccgcatatcccctcggatcatttctcgctgtttgtcgagtttgagatgcctgtgccg
tacccagacatcaataccattctcaaggaagattctcacaagccaagctccctcggtgca
attggcagtggcgtccacagggaaaataaaaacagatag
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