Mya arenaria (softshell): 128222775
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Entry
128222775 CDS
T09995
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
maea
Mya arenaria (softshell)
Pathway
maea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128222775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128222775
03041 Spliceosome [BR:
maea03041
]
128222775
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
128222775
Spliceosome [BR:
maea03041
]
Complex B
Other components
Prp19-related factors
128222775
Complex C
128222775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
PPR
ARM_TT21
Antiholin
Motif
Other DBs
NCBI-GeneID:
128222775
NCBI-ProteinID:
XP_052787849
LinkDB
All DBs
Position
17:complement(12358106..12385641)
Genome browser
AA seq
857 aa
AA seq
DB search
MVVKIEREKHNMPVVQKDPLKNIFFEEDDLPFEEDILRNPYTVKCWLRYIEHKKNSTANA
FNIIYERALKELPGSYKLWYSYLKLRRQQVRGKCITEPAFEDVNSAHERSLVFMHKMPRI
WLDYCEFLMGQGLITRTRRTLDRALRALPITQHHRIWPLYLKFVRMYDLKETAVRVYKRY
MKLSKENAEDYIEYLKSIGWLDQAARKLADIINDDSFVSKEGKSKHQLWNELCDLIAKNP
DKVTSMDIEPIIRQGLKRYTDQIGVLWNSLADYYIRGGHFERARDIYEESIQTVITVRDF
TQVFDAYAQFEKNLISAKMESMEESGPTEEDDHDLELRLSRLESLMDRRPLLLNSVLLRQ
NPHNVHEWHKRVKLYEGKPREIITTYTEAVQTVDPKIASGKPHTLWCEFAKFYENADQIE
DARVIFEKAIKVGYKHVDDLASVYCEWAEMEIRHENYEDSLKIMQKATTPPPRSVAYHDE
SEIVQARVHKSLKVWSLYADLEESFGTFKTCKAVYDRIIDLRIATPQIIMNYGLFLEENN
YFEEAFKAYEKGIALFRWPNVYDLWNTYLSKFIDRYGGKKLERARDLFEQCLENCPAKFA
KAIYLLYAKLEEEYGLARHAMAVYDRATQAVLPEEQNEMFNVYIKRAAELYGVTYTRPIY
EKAIETLNNEQAREMCQRFADLERKLGEIDRARAVYAHCSQICDPRSTATFWQTWKDFEI
KHGNEDTVREMLRIKRSVQAMYNTQVNFMSAQMLAAATTKGDNQAPSEIADEMQKLEEKA
RQLAEEAAKDQGKQDKGILFVRSNTTDEELGEMTKTTNPDEINIDEDFSTDEDEAVEVVQ
QQSVPTEVFGGLAKDDD
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtgaaaatcgagagagaaaaacacaatatgcctgtcgtgcagaaagatccattg
aagaatatattctttgaagaggatgatcttccctttgaagaggacattcttcgtaacccg
tacactgtcaaatgctggttgaggtacatcgaacacaagaaaaactccaccgccaatgct
ttcaacattatatatgagcgtgctctgaaggagctacctggaagttataagctctggtac
agctacttaaagctgcgtcgacagcaggtacgcggcaaatgcatcacggagcctgccttt
gaggatgtcaacagcgcccatgagaggtccctcgtgttcatgcacaagatgccgagaata
tggttggattactgcgagttcctgatgggccaagggttgataactcgtacaaggaggacg
cttgatcgagcattacgagctttacccataacgcaacatcaccgaatatggccactctac
ctgaagtttgttcgtatgtacgatctgaaggagactgctgtccgggtgtataagcgatat
atgaagctgagcaaagaaaatgctgaggactatatcgagtacctgaaatctattggctgg
ctggatcaagctgcccggaaacttgcggacatcatcaacgatgacagttttgtgtcaaaa
gagggaaagtcaaagcatcagctctggaatgaattatgtgacctgattgcgaaaaatcct
gacaaagtgacctccatggacattgaaccgattatacgacaaggtctgaaacgatacacc
gatcaaattggtgtgctttggaactccttggcagattactacatcagaggtggccatttt
gaaagggcaagagacatctacgaggagtccattcagactgttattacggtgcgagacttt
acacaagtgtttgacgcgtatgcccagtttgagaaaaatctgatcagtgctaaaatggaa
tctatggaagaaagtggtcccactgaggaagatgaccatgaccttgagctgcgactttcg
aggttggagtcgctgatggatcgaaggcctttactgctgaatagcgtgttgttgagacag
aacccacataacgtgcacgagtggcacaaacgcgtgaaactgtacgagggaaaaccacga
gagataatcaccacatacacagaggctgtgcagacggttgatccaaaaatagcatcggga
aaaccccatacactgtggtgcgagtttgcaaagttctatgaaaatgcagaccaaatcgaa
gatgcacgtgtaatattcgagaaggcgatcaaggttggctacaagcatgtagatgatctg
gcgtccgtctattgtgagtgggcagagatggagatacgacacgaaaactatgaagattcg
ttgaagataatgcagaaggctactaccccacccccaagatctgtggcataccatgatgag
tcggagattgtacaagctagggttcacaaatcgctcaaagtttggtcgctgtatgcagat
ctggaagagagcttcggaacattcaagacctgtaaagcggtctatgaccgaatcatcgat
cttcgcatcgccacgcctcagattatcatgaactacggcctcttcctggaagaaaacaac
tactttgaagaagcatttaaggcgtatgaaaagggtattgccttgtttaggtggccaaat
gtgtacgacctgtggaacacctacctttccaagtttatcgatcgatatggtgggaagaag
ctagagcgggctagagacctctttgagcaatgcttggaaaattgtcccgccaagtttgca
aaagccatttacctgctatatgccaaactggaagaggaatatgggctggccagacacgcc
atggctgtgtacgacagggccacacaggctgttttaccagaggaacagaatgagatgttc
aacgtctacatcaagagagcagcggagctatacggtgtcacctacacaagacccatctat
gaaaaagctattgagactttgaacaacgaacaagctagagagatgtgccaaagatttgca
gatcttgaaaggaagcttggagaaattgacagggctagggctgtctatgcccactgttct
caaatttgtgacccaaggtcgactgctaccttctggcagacgtggaaggactttgaaatc
aagcatggaaacgaagacacggtccgcgagatgcttaggattaaacgcagtgttcaggcc
atgtataacacgcaggtgaacttcatgtcggcacagatgctcgctgcagccaccacaaag
ggggataaccaagcaccaagtgagattgctgatgagatgcagaaactagaagaaaaggca
aggcagttggctgaggaggcagctaaagaccaaggcaagcaagacaaaggcatcctattt
gttaggagtaacactacggatgaggagttaggcgagatgacaaagacaacaaaccctgac
gagatcaacatagacgaagacttctcaactgatgaagatgaggcggtcgaagtggtccag
cagcagtccgttcccacggaggtgtttggaggactcgccaaggatgacgattaa
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