Mya arenaria (softshell): 128222891
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Entry
128222891 CDS
T09995
Name
(RefSeq) general transcription factor IIH subunit 4-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
maea
Mya arenaria (softshell)
Pathway
maea03022
Basal transcription factors
maea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128222891
09124 Replication and repair
03420 Nucleotide excision repair
128222891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128222891
03400 DNA repair and recombination proteins [BR:
maea03400
]
128222891
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
128222891
DNA repair and recombination proteins [BR:
maea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
128222891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
ANT
Motif
Other DBs
NCBI-GeneID:
128222891
NCBI-ProteinID:
XP_052788025
LinkDB
All DBs
Position
17:3423856..3440574
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AA seq
462 aa
AA seq
DB search
MAGLLSTKTLDCKDLHSYLKTLSSYTLDRLYNHPATCLAVFRELPELAKHYIMRLLFIDQ
PISQAVIGLWANNKYVSDHRSAVGALSDLRIWYEQPLPGGMQGWIINSTFKSNMKTALLG
GGQAWSGRGAAPLRSDKNSKDIPFLDKYAIERWECVLHFMVGSTEGSDGVSRDTIEVLKH
SGLMRVEEGDPMPCITPAGFQFLLMDTGSQIWYFMLQYLNMSDSRGLDLVECLSFLFQLS
FSTLGKDYSTDGLSDGQSRFLQHLREFGLVYQRKRKEKRYYPTRLAINLASGLTGMATDE
NRQGYMVVETNYRVYAYTDSALNIALLALFCEMLYRFPNMAVANLSRDSVRAALMRGITA
EQIISFLKSHAHPEMLKESLSLPPTIIDQVRLWELERDRFKFDEGVLYSQFQSQPDFEKL
KDYAKDQDVLVWHNSNKRVMVVSRAGHDSVKKYWKQIKQSNT
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggctggacttctgtcaacaaagacattagattgcaaagatttgcacagttacctaaag
acattatcatcttatacattagacagactctataaccatccggcaacatgcctggcagta
ttcagggaactaccagagttggcaaaacactacatcatgagacttcttttcattgaccag
ccaatctcacaggctgtcataggactctgggccaacaacaaatatgtcagtgaccacaga
agtgctgttggtgcgttatcagacctccgtatctggtacgaacaacctctacctggtgga
atgcaaggatggattatcaactccacgtttaagtcaaacatgaagactgcgctgctggga
ggaggtcaggcatggtctggacgaggtgctgccccattacgttcagacaaaaacagcaag
gacatcccattcttggataaatatgccattgaaagatgggagtgtgtcctacacttcatg
gtcggttcaacggagggctcggatggagtgagcagggacacaattgaggttctcaagcac
tctgggctcatgagagtagaggagggtgaccccatgccctgtattacccctgcagggttc
cagtttctcctgatggacaccggttcccagatttggtacttcatgttgcagtacctgaat
atgtcagattcccggggtctagatctggtagaatgtttgtcattcctgtttcaactcagt
ttctccaccctcggaaaggattacagtacagatggattaagtgatggacagtcacgattt
ctgcagcatctccgggagtttggtcttgtctatcaaagaaagagaaaagagaagcgttat
taccccacccgcctggccatcaacctagcatctggtctcactggtatggctactgatgaa
aacagacagggatacatggttgtggaaacaaattacagggtttacgcttatacagactca
gctctgaacattgccctgttggctttgttttgtgagatgttataccgcttcccaaacatg
gcagtggcgaacttgagcagggacagtgtaagagctgctttaatgaggggtatcacagct
gagcagataatcagcttcttaaaatctcatgctcatcctgaaatgttaaaggagtcgctc
tccctcccaccaacaatcatagaccaagttagattatgggaactggagagagatcggttc
aagtttgacgaaggggtcctgtacagtcagtttcaatcacagccagattttgagaagctc
aaagattacgcaaaggatcaagatgtgttggtttggcacaatagcaacaagcgtgtaatg
gtcgtctctcgcgctggtcacgattctgtcaagaaatactggaaacagataaaacaatct
aacacttga
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