Mya arenaria (softshell): 128224075
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Entry
128224075 CDS
T09995
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03013
Nucleocytoplasmic transport
maea03015
mRNA surveillance pathway
maea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128224075
09122 Translation
03013 Nucleocytoplasmic transport
128224075
03015 mRNA surveillance pathway
128224075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128224075
03041 Spliceosome [BR:
maea03041
]
128224075
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128224075
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128224075
Spliceosome [BR:
maea03041
]
Complex C
Other components
EJC/TREX
128224075
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128224075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Utp25_C
BRCT
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
128224075
NCBI-ProteinID:
XP_052789680
LinkDB
All DBs
Position
17:47776907..47784438
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AA seq
426 aa
AA seq
DB search
MADTENADELLDYDEEETEQAGDAAGDAVVKKDVKGTYVSIHSSGFRDFLLKPELLRAIV
DRGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVLAH
TRELAFQISQDYERFSKYMGSVKIAVFFGGMPVKKDEEVLSKNCPHIVVGTPGRLLALIK
SKALNLKNVKHFILDECDKMLCELDMRKDVQEIFRMTPHEKQVMMFSATLSKDIRPICKK
FMQDPMEVFVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQRCM
ALAQLLHEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFN
YDMPDDSDTYLHRVARAGRFGTKGLAITFVSDETDAKVLNDVQERFEVNISELPDEIDIS
SYIEGR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggccgatacagagaacgctgatgaacttctggactacgacgaggaggagactgaacag
gctggggatgcagctggtgatgctgtggtcaagaaagatgtgaagggaacgtatgtgtcc
atccatagttcaggattcagagatttcctactcaagccagaattgctgagagctattgtg
gacaggggatttgagcatccttcagaagttcagcacgaatgcataccacaggccattctg
tcaatggatgtgctttgtcaggccaaatctggtatgggtaaaactgccgtgtttgttctc
gccactctgcaacagctggagccagttgatggacaggtgtctgtattggtgcttgcccac
accagagagctggccttccagatcagtcaggactatgagaggttcagcaagtacatgggc
agtgtcaagattgctgtcttcttcggcggtatgccagttaagaaagatgaagaggtcctt
agcaagaactgcccccatattgttgttggtacccctggcagacttctggcccttataaaa
tctaaggcgctgaatctgaaaaatgtgaagcacttcatcctggatgaatgcgataaaatg
ctctgtgagctggacatgcgcaaggatgtgcaagagatcttcaggatgacgcctcatgag
aagcaggtcatgatgttcagcgccactctcagtaaagacatccgaccaatctgcaagaag
ttcatgcaagatcccatggaggtgttcgtggatgacgactctaagcttaccctgcacggt
ctccagcaacattacgtcaagctgaaggacaacgagaagaacaggaaactgtttgaactg
cttgatgtgctggaattcaaccaggtgataatctttgtgaagagtgtgcagcggtgtatg
gccttggcccagcttctccatgaacagaacttccctgccatcgccatccatcgggccatg
acacaggaggaaagattgtcgagataccagcagttcaaggatttccagaagcgaatcttg
gtagccacgaacctgtttgggcgtggcatggacattgagcgggtcaacatcgtctttaat
tatgacatgccagacgactctgatacctaccttcacagggttgcaagagctggcagattt
ggaacaaagggtcttgcgatcacgtttgtgtcagatgagactgatgccaaggtcctgaat
gatgtacaagagcgatttgaggtcaacatctcggaactgcccgatgaaatcgacatctcc
tcttacatcgagggacgttga
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