Mya arenaria (softshell): 128226537
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Entry
128226537 CDS
T09995
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
maea
Mya arenaria (softshell)
Pathway
maea03013
Nucleocytoplasmic transport
maea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128226537
09122 Translation
03013 Nucleocytoplasmic transport
128226537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128226537
03041 Spliceosome [BR:
maea03041
]
128226537
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
128226537
Spliceosome [BR:
maea03041
]
Complex C
Other components
EJC/TREX
128226537
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
128226537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
MoaE
Motif
Other DBs
NCBI-GeneID:
128226537
NCBI-ProteinID:
XP_052792423
LinkDB
All DBs
Position
3:complement(25348315..25392281)
Genome browser
AA seq
1636 aa
AA seq
DB search
MAVSFLSPEQCKTWEKSGKQEFLKFINGVGDRSVLSSLGNRDFRQAIYDLCQHVIKGNLR
VEQAIHVFHDLKDKYPDLISFVVDILSLIDVELSAVEEIKGAREKLCTLIQTLGNTFDCD
ALLKSRLDHETLESAGLVPSKTVFSQKHVKIKTRLYYKQQKFNLLREESEGYSKLVAELN
QEITYKITPAVMLQNIKSLIGCFNLDPNRVIDVLLESFENRPEVEDFYIPLIQSYVQDNE
TLCHCLGLKFQFFKDDETPSSLFKLAAILLKNDLVHLETLYPHLHPVDSVILEYSKKEMA
DAKAYARKLMVINLADKSDEKKKEEEEVKIDVRVNNQKLGLVEALLCIGAWEKSKCILDW
LPEFFATTHKPVASALCALIHTVMDPVYRTSSGMTSKLVSKWPPIEELGGSVPRATSFQE
VNTLVFPMVAYLGPYISCDPILLMKLIRLSKQYMIKRAQGSLSPEDAPTYYGLLNVIDEA
LLPSVSFLSCNCCISQEIWTLLKLFPYELRYRMYGNWKNELYISHPALIRVKADCLEKSK
YIMKRLAKENVKISGRQLGKLSHSNPGVLFEYILRQVEKYDNLIGPVVDALKYLTDLSYD
ILIFCIIESVAVPEKEKTKLGETTLASWLQSLATFAGCICKKYTVEQTGLVQYVTNQLKA
GRSTDLLLMQEIVQKMAGIEVSEEITADQLDAMSGGELLRQEGGYFTQVRNMKKSSSRLK
DTMLEHDLALSLCLLISQQRDSVIFKEATRHLKHYGKLYDQCQDTLVQFGSFLSMQLSTE
EFVKRLPPIHKMVTEFHVPPDAAFFLSRPLYSYDINAKYDELRKAERAEKDKKDKLSTSA
KTQKYIEAAEFVMAPVIENVRPLQPSKIWEELSPTFYATFWALSMYDIHVPSSAYEKQIS
LLQGQANSADDNKDLGPSKRKKERERCNAMIDKLKDEEKRQTEHVQRITARLKAQRDQWF
VSRATKNETITQFLQLCIFPRCCFTASDAVYCAEFIHILHNLKTPNFSTLICYDRIFCDI
TYTVSSCTENEAQRYGRFLCAALDTVMRWHSSKEFYEKECGAYPGFVTVFRKGENSNQKA
DQLDYENYRHVCHKWHFRITKAMVTCIESSNYIQIRNALIVLTKILPHYPRIVQFGSPLE
RRVDRLKQEEKEKRPDLFALAMGYSGQLKSKKQFWVPETDFHVRDKEKKAAAAAAAASAP
VSGSSADAAKDKQIRPAGSGERSSASKEKEPKKTKTDKAEKTLEKARSEEKGRDSPVDAK
KSNSSTATEKKEVTLASSKASGSKDKKEKEKSEKLAEPDKARSEDKMDKSKDDKATRKDE
KGIKAKEEKIDTHKVKIKREDKSDIVTPLKLKVKQEKVEPPEESENLRSDRKEKGKEKKG
EKERLKVKVEKDGDEPKGKDVRDKEEKLRAKLERMKEETKDRHEKEGRKEKHDRKLKRSY
SPEEAAKEVMYRDHRDAEAASNSSHGSHRQTPEASPRRAEERDTKRRKTEAIASTSKEDL
GSSSKSRHRHSVSPDKERERKEKKRLRKEAKALSDADTSYANSLDEEDREYETMSVSMSK
KKKSLDGSLRGSKQNGDSDDRWREGSYEQHYDDDGYARPTTTRKEHREAELEHERSRSKD
REKKKDKERSKRPKKS
NT seq
4911 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtcttttcttagtcccgagcagtgcaaaacatgggaaaagtcagggaaacaa
gaattcttaaaattcatcaacggtgttggtgatcgctcagtactatcatccctcggaaat
cgagacttcagacaagccatttatgatctctgccagcatgtcatcaaaggcaatctcaga
gttgaacaagctattcatgtgtttcatgacttgaaggataagtatcctgacttaatttct
tttgtggttgacatcctgagcctgatagatgttgagttgagtgcagtggaggagattaaa
ggggccagggagaaattatgtaccctcattcaaacccttggaaatacatttgactgtgat
gcgctgctcaagtcacggctggaccatgagacgttggagagtgcagggctggttcccagc
aagacagtcttctcacagaaacatgtcaagatcaagaccaggctctactacaagcagcag
aagttcaacctgttgagagaagagagcgagggctactctaaacttgtggcagagcttaat
caagagatcacatacaaaattacccctgcggtcatgcttcaaaacatcaagtcccttatt
ggctgttttaacctggaccctaacagagttatagatgttttactggagtcgtttgagaac
cgtccagaggtggaggacttctacattccgctcatacagtcttacgtgcaggacaacgaa
accctatgccattgcctcgggctcaagtttcagttctttaaggatgatgaaactccaagc
tccctgttcaaactggcagccatacttctcaagaatgacctagtccacttggagactctg
taccctcatctgcatccggtggacagcgtgattctggagtacagtaagaaagagatggca
gatgccaaggcatacgctcgtaaactaatggtgatcaaccttgcagacaagtctgatgag
aagaaaaaggaagaggaggaagtcaaaattgatgtgcgagtgaacaaccagaaactaggg
ctggtggaggcattactgtgtatcggtgcttgggagaagtccaagtgtatcctggactgg
ttaccagaattctttgccaccacacacaaacctgtggcctccgccttgtgtgctctcata
catactgttatggacccagtctatcggacgagcagtggaatgacgagtaaacttgtgagt
aaatggccacccattgaggagctgggcgggtcagtcccacgtgcaacctcgtttcaggaa
gttaacaccctcgtgtttccgatggttgcctatcttggcccgtacatctcgtgcgatcca
atactactcatgaagctcatcaggctcagcaaacagtacatgatcaagcgtgcccaggga
agcttatcaccggaagacgccccaacgtattacggcctgttgaacgtgatagatgaggcc
cttctgccgtccgtctcatttctctcgtgtaattgctgtatctcacaagagatatggact
ctcctcaagctgttcccttatgagctcaggtaccgtatgtatggcaactggaagaacgag
ctgtacatctcgcacccggctctgatacgagtgaaggctgattgcctggagaagtccaaa
tacattatgaagcgtctggcaaaagagaatgtgaagatatctggacgacagctcggaaaa
ctgagccacagcaaccctggggtcctctttgaatatatcctgcggcaagtagagaaatat
gataacctgataggcccggtggtggacgctctcaaatacctcacagatctctcgtatgac
attctcatattctgtataattgagtcagtggctgtgccagaaaaggagaagacaaaacta
ggggagacaaccctggcaagctggcttcagagtctggcgacttttgctggctgcatctgt
aagaagtacacagtggagcagacgggactcgtgcagtacgtaaccaaccagctcaaggct
ggcaggagcacggacttgctattgatgcaggaaatagttcagaagatggctggtattgaa
gtgtctgaggagataacggctgatcagttggatgcaatgtcagggggagaacttctcagg
caagagggaggctacttcacccaggtgcgcaatatgaagaagtcgtcgagtcggctgaag
gacacaatgttggaacatgaccttgccctgtctttgtgtctgctcatatcacaacagagg
gattccgtcatcttcaaggaggcaaccaggcatctcaaacactacggaaaactgtatgat
cagtgtcaagacacgttggtacagtttggcagtttcctgtccatgcagctgagtacagaa
gagtttgtgaagagactcccgcccatacacaagatggtcacagagtttcacgtgcctcca
gacgctgctttcttcctatccaggcccctgtacagctatgatatcaatgccaaatatgat
gagctaagaaaagcagaaagagccgaaaaagacaaaaaagataaactgtccacatcagcc
aagacacagaagtacatagaggcagcagagtttgtgatggccccagtgatcgaaaatgtg
cggccgctccagccctccaaaatatgggaggaactcagtcccacattctatgcgacgttc
tgggcgctatccatgtacgacattcacgtgcctagttcagcatacgagaaacagatatcc
cttctacagggccaggccaacagtgctgacgacaacaaagatctgggtccaagcaagcgt
aagaaggagcgtgagcgttgtaacgccatgattgacaagctgaaagatgaggagaagagg
cagacggagcatgttcagcgcatcactgcaaggctcaaggcacagagggaccagtggttt
gtctcaagggcgacaaagaatgagaccatcacccagttcctgcaactctgcattttcccg
cggtgctgtttcacggccagtgatgccgtgtactgtgccgagttcattcacattcttcac
aacttgaagactccaaacttctcaacgctcatctgttatgacaggatattctgtgatatc
acatacaccgtatcctcatgcacggagaacgaggctcagcgctatggccgcttcctatgc
gccgccctcgacactgttatgaggtggcacagcagtaaggagttctatgaaaaggaatgc
ggtgcctatcccggctttgtgacagttttccgcaagggagagaactccaaccagaaagcg
gaccagctcgattacgagaattatcggcacgtttgtcacaagtggcacttccgtatcacc
aaggcaatggtgacgtgtatcgagtcaagcaactacatacagatcagaaatgcgcttatt
gttcttacaaagatcttgccccattaccctcgtattgtccagtttggttccccgctagag
agaagggtggacagactgaaacaggaagagaaggagaagagacccgacttgtttgccctt
gccatggggtactccggtcagttgaagagcaagaaacaattttgggttcctgagacggac
ttccatgtacgagacaaggagaagaaggcagcagctgcagcagccgcggccagcgcccct
gtgtcaggaagttcagctgatgcagcaaaggacaaacagatcaggccagcaggcagtggt
gaaaggagcagcgcttcaaaagaaaaggagcctaaaaaaacaaaaacagacaaagcagag
aagactctggaaaaagctcgctctgaggagaaagggcgtgactcacctgttgatgcaaag
aagtccaacagcagcacagctacagagaagaaggaagtcacacttgcaagttcaaaagca
agtggttcaaaggacaaaaaggagaaagaaaaatctgaaaagttggctgaaccggacaag
gctagatctgaagataagatggacaaatccaaggatgacaaagctacaaggaaggatgaa
aaggggattaaagctaaagaagagaagatagatactcacaaagtaaagatcaaacgtgaa
gacaagtcagatatcgtaacgcccttgaagttgaaggtgaagcaagaaaaagttgagcct
ccagaagagagtgaaaatcttcggtctgataggaaagagaagggaaaagagaagaaggga
gaaaaggaaaggctgaaagtcaaggtcgagaaagatggggatgagccaaaagggaaagat
gtgagagacaaggaggagaagctgcgagccaagctggagcggatgaaggaagagacgaaa
gaccgccatgagaaggaagggaggaaggagaaacacgatcggaaacttaagcgcagttac
agcccagaggaggcagcgaaggaggtgatgtatcgggaccatcgcgacgcagaagcagct
tccaacagcagtcacggctcccacagacaaacgccagaggcctctccacgcagagctgag
gagagagatacaaaacgtaggaaaacagaggccattgcgtccacttccaaggaggatttg
ggatcttcgtctaaatcccgccacagacacagcgtctcaccggacaaggaacgggaacgc
aaggagaagaagaggctgcggaaagaagctaaagccctcagtgatgctgacacctcgtat
gccaatagtttggacgaggaggacagagagtacgagaccatgagtgtttcaatgtccaag
aagaagaaaagcctggatggctcattacgtggaagcaagcagaatggtgactcagatgat
cgatggcgggaaggaagttacgagcaacactacgatgatgatggatacgcgagacccacc
accaccaggaaggaacaccgagaagcggaacttgagcatgaacgatctcgtagtaaagac
agggagaagaagaaagataaagaaagatcaaaacggccaaagaagtcttga
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integrated database retrieval system
