Mya arenaria (softshell): 128226868
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Entry
128226868 CDS
T09995
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
maea03041
]
128226868
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128226868
Spliceosome [BR:
maea03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128226868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
HA2_N
DEAD
Ank_2
Ank_5
Ank
AAA_19
nSTAND3
AAA_22
Ank_3
ResIII
T2SSE
DUF2226
AAA_16
ATPase
NPHP3_N
AAA_30
Motif
Other DBs
NCBI-GeneID:
128226868
NCBI-ProteinID:
XP_052792915
LinkDB
All DBs
Position
3:complement(69970158..69997991)
Genome browser
AA seq
1500 aa
AA seq
DB search
MSKKQPPRPSSTGSAGTGRRGRGGKMPDWGVRPTVGPRPEEDACISEEVKIGINLAIERF
RMNEEQKELEFPSSLTATERAYVHRFADQLGLTHKSRGKNASRFLVLSKKEGAKTEVSSA
TFQLVRNSKFQIGSLLQRFPVTSKERLELLPNVDKTHVNEVSKELARTATGRLNNGLPQV
PPVRGNSELASFARSLPINQYREQILETVKQNQICLVSGETGSGKTTQVPQMILDDCHAR
GLPCRLFCTQPRRIAALSVSERVAAERGESVGQTVGFQIRLESRVSPKTLLTFCTNGVLL
RTMMGNENALDTVTHVIVDEVHERDKFCDFLLISLRDIARRNPNLKLILMSATLNTKLFI
KYFNNCPVVAVPGNLFPVDEYFLEDILSWTQYTNRKMERYKAERKSKTERDARLSDWVDP
RVVTGRRRKHHLEDLEDEEEENKEPDDRNKIIEQLSMLGIAEKDEEELDSVIKAEMDQCM
SEIWLSGSDEHFSQLFYFISSENVSVDYQHSDTTVTPLMIAAGRGFVPIVQQLLALEADP
GIRSSNGWTALDWAKKFNQEEIIAVLEEHMLTSSAGSQKDTEMEEDLSGETEEKREQREL
LTVYQHCWDDDKVDIDLIAELLFLIVNTKPEGAVLIFLSGYDEIVNMRSRIEDDNTFSNI
RYTLYCLHSAMQTADQRKVFRPSPPGIRKIILATNIAETSITINDVVYVINSGKVKEKTF
DALLQVTMLKSNWISKASSSQRKGRAGRCQPGVCYNLFSRRRHQHMMEFATAELIRCPLQ
ELCLQTKLLAPVNENIEDFLAKAPEPPPYLVTRSALNILKQMDALDPNEELTELGRHLAD
LPVEPHLGKMVLYSIVLKCLDPILTIVCALSYKDPFLLPAWASQKREVHIIRRDYAANSF
SDHMALLRVFQAWQKARTDGWERNFCTRNYVSPAVMEMIVGMRSQLLGQLRASGFVRARG
GGDIRDLNTNSENWAVVKAALCAGAYPNIVRRDKYTQKLTGQSSEKIGVHKSSVLPDKVG
SLPSDWVFYEEMTRSGVTPAFKSLACIRTCTVVSPITVALFSGPAKLPADAIKETIQDEG
MVGLGEPSDSENEDPEENKACLLQLSDWLAFRIDAESACLGIQLRQKWHCLFLKRMGAPS
KPLTQADEAVVSAVVNVLTNEEQALGLQQPAGIGQRPRPMSAESILTGSCRGDGMSHDPS
MDSVRHRFSTSAKKATSTPPKRKDFMSPKLIHSGASSNHSSPSSSGHHGSMASSPYTSPQ
LGPGSGQPRYFIMKCSNQRNIDISVSKGAWATSRANEKKLNKAFQDGNIVYLIFSIQSSG
HFQGYAKMSSIIGTEKSYDYNGPGGVFSVDWVKRGNLPFQMTHHLSNPWNESKRVQVSRD
GQEVEPSVGHALIQLWDSYPDNNGDNTHEDPAYTTHRESTQQGFDRCQLYTDITEEPSGY
MGQYQNWGGYQPRGRRPARGQGHIVAYQGHRGGYAGYQGQQGQVVYGNQYQQFGYYPHRK
NT seq
4503 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaaacagccaccaaggccatcgagcactgggagtgctggtacaggcagaaga
ggtagaggtggcaagatgcctgactggggtgtgagacccactgttggtccaaggccagag
gaagatgcatgtataagtgaagaagttaagattggaatcaatctagcaattgaaagattc
cgcatgaatgaagaacaaaaagaattagaatttccatcatcattgacagctactgaaagg
gcatatgttcatagatttgctgatcaacttggcttgactcacaaaagtagaggtaaaaat
gcatctcgtttcttggtgctgtcaaagaaggaaggagcgaagacagaagtgagcagtgcc
acgtttcagctggtacgcaactccaagttccagattggttccctgctccagcggttcccc
gtcaccagcaaggaacggctcgaactcctacccaacgtggataaaactcatgtcaatgaa
gtttcaaaggagcttgcccgaactgcgacaggtcgtctcaataatggtcttccacaggtc
cctccagtgcgaggcaactctgagctggccagctttgcccggagcctgcccatcaaccag
taccgagagcagatactggagactgtcaaacagaaccagatctgcctggtgtcgggggag
acaggctctgggaaaaccacacaggttccccagatgatcctggatgactgccatgcaagg
gggctcccatgtcgcctgttctgcacccagccccggcgtatagccgccctcagtgtgtct
gagagggtggcagctgaaagaggagaatctgtaggacagactgtcggatttcaaatacgg
ctggaatccagggtatctccaaagacgttgctcacattctgtacaaatggagtgttgctg
agaactatgatggggaatgagaatgcccttgatacagtcacacatgtcattgtggatgaa
gtccatgaacgtgacaagttctgtgattttttgctgatctcactgcgagacatcgcgagg
aggaacccgaatctaaaactgatcctcatgagcgccacgctcaacacgaaacttttcatc
aagtacttcaataactgtcctgtcgttgcagtgccaggcaatcttttcccagtggatgaa
tatttccttgaggacattctttcatggacccagtacaccaaccggaagatggagagatac
aaggcagagagaaaatccaagactgagcgagatgcacgtctgtcagactgggtggaccca
cgggtggtgacggggcgacgaagaaaacaccacctggaagaccttgaagatgaggaggaa
gagaacaaggagcctgatgacaggaacaagattatagagcagctgtcgatgcttggtata
gctgagaaggatgaggaggagttggactctgtaatcaaggccgagatggaccaatgtatg
tccgagatctggctcagcggcagtgatgagcacttctcccaactcttctacttcatctca
tctgagaatgtcagcgttgactatcagcactctgacacaactgtgacgcccctgatgata
gctgcaggccgtggatttgtaccaattgtacaacaactgctagccttggaggcagatcca
gggatccgctctagtaatggttggacggccctggactgggccaagaagtttaatcaggag
gagatcattgctgtcctcgaggaacacatgttgaccagcagtgcgggctctcagaaggat
acagagatggaggaagacttgtctggtgagactgaggaaaaacgggaacaaagggaactg
ctcacagtctaccagcactgctgggatgatgacaaggtggacatagaccttatagctgag
ctactcttcctcattgtcaacactaaacctgaaggtgcagtgttgatattcctgtctggt
tacgatgaaattgtcaacatgagaagtaggattgaagatgataataccttctcaaatatc
agatacaccttgtattgcctgcactcggctatgcagactgctgaccagaggaaagtgttc
agaccttcaccaccaggcataaggaagattattcttgccacaaacatagcagagaccagt
atcacgataaatgatgttgtctatgtcataaattctgggaaagtgaaagagaaaacattt
gatgctcttctccaagtgacaatgttgaagagtaactggatctcaaaagccagctcttcg
cagaggaaaggcagggctggtcgatgtcagccgggagtgtgttacaacctgttcagcagg
aggagacatcaacacatgatggagtttgccactgctgaactcatcagatgcccactccag
gagttgtgtctgcagacaaagctgctggccccagtgaatgagaacatagaagacttcctg
gccaaggctccggaacccccgccctacctggtcacccgctcagcactcaatatactcaag
caaatggatgccctggacccaaacgaggagctgaccgagctggggcgccacctggctgac
ctccctgtggagccgcacctcggcaagatggtcctgtactcaatcgttctcaagtgtcta
gaccccattctcaccattgtgtgtgccctttcttataaagaccctttcttgttaccagca
tgggcctcacaaaagagggaagttcatatcatcaggcgggattatgctgccaactcattc
agtgatcacatggctctactccgagtcttccaggcttggcagaaggctcgcactgatgga
tgggagagaaatttctgtacccgtaactatgtgtccccggctgtcatggagatgattgtt
ggcatgagatcccagctgttaggccagcttcgggcttcaggttttgtgcgggctcgaggg
ggaggtgacatcagggacctgaacacaaactctgagaactgggcagtggtcaaggctgcc
ctgtgtgctggagcataccccaacattgtgcgaagggacaagtacacacagaaactcact
ggacagtcgtcagagaagataggtgtacacaagtcttcagtgttgccggacaaagtcggc
agcctgccatcagactgggtgttttacgaggagatgaccaggtcaggtgtgaccccggcc
ttcaaaagcctggcatgtattcgtacctgtacggtcgtgtctcccatcaccgtggccctg
ttctcagggccggccaaacttcctgccgatgccatcaaagaaacaatacaggatgagggc
atggtgggactaggggagccgagtgacagcgagaatgaagacccagaggaaaacaaggcc
tgtctcctacagctctctgactggctagcattcaggatagatgctgagtctgcatgtctg
ggtatccagctgagacagaaatggcactgtttgttcctgaaaagaatgggagctccatcc
aaacctctcactcaagctgatgaggcggtggtatctgcagtggtgaatgtgttgaccaat
gaggagcaggccctgggacttcaacagcctgccggtattggccagaggcccagacccatg
tctgcagagagtatcctgactggcagttgtcgtggtgatggtatgtcacatgacccctcg
atggacagtgtgcgccacaggttctccacgtctgccaagaaggcaaccagcacaccgcca
aagaggaaagattttatgtctcctaagctaatccactctggagcgagttcaaaccatagt
agcccatccagcagtggtcaccatggtagcatggccagttccccatacacaagtccccag
ctgggcccaggcagtggtcagccgcgatacttcatcatgaagtgttccaatcagagaaat
attgacatctctgtcagcaaaggagcctgggcaacatcaagggctaatgagaagaaactg
aataaagcttttcaggatgggaacatagtgtacctgatcttctccatccagagtagcgga
catttccagggctatgccaaaatgtcttccatcattggcacagagaaatcctatgactac
aatggaccagggggtgtcttttcagtcgactgggtaaaaaggggaaacctaccattccag
atgacccaccacctgagcaacccctggaacgagagcaagcgagtacaagtcagcagggat
ggacaggaagttgagccatcagtgggacatgccctcattcagctatgggatagctatcct
gacaacaatggtgacaacacacatgaggaccctgcatacactacacatagggagtctaca
caacagggttttgacaggtgtcaactttacacagacattacagaagagccatcaggctac
atgggtcaatatcagaactggggtggttatcagccccgtgggcgacgcccagcccggggc
cagggccacattgttgcctaccagggccacaggggaggatatgccgggtaccaggggcag
caggggcaggtggtatatgggaaccagtaccagcaatttggctactacccacacaggaag
tag
DBGET
integrated database retrieval system
