KEGG   Mya arenaria (softshell): 128227036
Entry
128227036         CDS       T09995                                 
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1-like isoform X1
  KO
K11367  chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
maea  Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:maea00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:maea03021]
    128227036
   03036 Chromosome and associated proteins [BR:maea03036]
    128227036
Transcription machinery [BR:maea03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     128227036
Chromosome and associated proteins [BR:maea03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    SAGA complex
     128227036
    SLIK complex
     128227036
SSDB
Motif
Pfam: SNF2-rel_dom HTH_Hrp3 CDH1_2_SANT_HL1 Helicase_C CHD1-like_C Chromo ResIII HDA2-3 DEAD Myb_DNA-binding
Other DBs
NCBI-GeneID: 128227036
NCBI-ProteinID: XP_052793170
LinkDB
Position
3:complement(35080011..35118350)
AA seq 1833 aa
MSKTADNLDITDLDFNKPLFGDIPTKTTSKLPSTDYNNDESYKHSLPRHKVKEEDHVSNN
SESNSNNSSGSGSESESDSENSASDGSGSDEKSGSSASGSEGEVTPRKDSKEYGSQLRLH
DSDTQDEPKAKKGRGRPKKEEILQLKEENDNFGERDRRDPKFWQEDPDLYGVRRSGRAKK
EPTRYNVGLSSSDEERPRRKRRNTGQRKNSGEWNSDSSNSEASSTERYKPIRQAVNRVRK
GKRGRPARSSAGNVSRQRKPQLSSGSEGDNFSDSGSDYDEASRSFKSYTKRSAAQKVSYK
EDTDGATDSDDIIEGPEDDVNVVKEDENPEGIDRILDHREGKKGATGAKTTIYNVEANGN
PNITLPENTERETQFFIKWKGWAHIHNTWENEETLREQKLSGLKRLDNYIKKMDEINEWK
RFASPDDIEYYDVQQEYNEDLYKNCLAVERIIAHSDEKNSNEGNGFPDYLCKWTGLPYSE
VSWEDGELLSAKFQDRIDNYMVRNKSQKIPTKLSRVLKNRPKYLPLKNQPSFIGSDDLQL
RDYQLDGVNWLMHSWSKENSVILADEMGLGKTIQTIGFVSILYNMYQLYGPFIIVVPLST
VVAWQREFENWCPDINVVIYLGDVNSRNIIRDHEWCHPGNKRLKFNVVVTTYEILLKDKA
FLGAVSWAELIVDEAHRLKNTDSLLYRTLMEFKANHKVLITGTPLQNSLKELWALLHFIM
PLKFPKWSEFEEKHSRADKTGFTQLHKQLEAFLLRRVKKDVEKSLPAKTEQILRVEMSSK
QKQYYKWILTKNYKELNKGVKSSISSFVNIIMELKKCCNHQLLVRPEDSEENSVDHLQNL
IRGSGKLILLDKLLLRLKEKGHRVLIFSQMVRLLDILSEYLQMRHFQFQRLDGSIRGDLR
KTALDHFNAEGSQDFCFLLSTRAGGLGVNLATADTVIIFDSDWNPQNDLQAQARAHRIGQ
KNQVSVYRLVTKNSVEEEIVERAKRKMVLDHLVIQRMDTTGRTVLNKGGGDLTNTKTPFS
KNELASILKFGAEELFKEDNDDEEPQVDIDEILQQAETREMAENNGVGDELLSQFKIVTF
ENLEDDEIESTGKDWSSIIPKNDIERVEEEERQDLLLELNLPPRQRTTLKQLEKSYDSDK
ENDDDDDDEDSGSDDDRPKKRGRPRAGGKNDQIKGFTNAEIRRFVKSYKKFGDPLSRLDD
IACDAELQEKSESDLRKMAELLKSQCDHAFKEFNSKKQLEEQNGETPASKKGPRSINCKI
ASVIVNVQSIVKAGGDLEPLVRYIPKTKSEKKKFRIDFHCKAGNFDCPWDVEEDSALLKG
IYDYGMGNWEQIKMDQELGLYSKILPDGDKKPQAKHLQTRADYLLRLLKKHLDGTGVVSR
PSGRGRKSKKLMKSKAEVPDYVDDSDSSAKSANDTNQTAPDHTGTQKSHKKADKSDKDTS
KKSDDHDHHHHHHHHNKQEKRKKEKEKKKKMKEKAGPMHFTAINEPVAISQDGEFDGELP
EEVFKECKERMRPVKRSLKHLDRPEEGLSDRDQVIHTRQCLLKIGDRINECLTEMNNPEK
IKQWRCYLWIFVSKFTEFDARKLHKLYKHALKKRDEERDKDENSHQSKSQQGNDNHHKRS
HEDGKSYNSKRSHIEHDSSSNSNWSRPSTTAPHSLATTTFQNAFNNSSVTVSSPSDRWKQ
SSPLDQRAQPEKKPYSRNRYEGGNSSYSRGAGGQYPHHDHPRFSDHKPHYGGDNKGFNER
REGGHISGYSKREYGPNSNPYGFRDPRNEGMRSDYRKYGSGGGYRDYPPASGRDSHVNSS
FSHDRKRRNEYSYDREARDPRYRKEQRLDDSYS
NT seq 5502 nt   +upstreamnt  +downstreamnt
atgagcaagacagcagacaatcttgatatcacagaccttgacttcaacaagccattgttt
ggtgacatcccaaccaagaccacctcaaagctaccatcaaccgactacaacaatgatgag
agttacaagcattcactgcccagacataaggtgaaggaagaggatcatgtgtcaaacaac
tccgagtctaattcaaacaactcaagcgggtcaggatcagaatctgagtctgactcggag
aattcagcctctgatgggtcaggtagcgatgagaaatcaggaagtagtgcttcaggaagc
gagggtgaggtcacacctcggaaagatagtaaagaatatgggtcacaactgaggttgcat
gactctgatacacaggatgagccgaaagccaaaaagggccggggtagaccgaagaaagaa
gaaatattgcaattaaaagaggaaaacgataattttggagaaagagaccgccgtgatcca
aagttctggcaagaggacccagacttgtatggggttcggaggtcaggccgggccaagaag
gaaccaaccagatataatgtagggttaagtagcagcgatgaggaacggccaagaaggaaa
agacgaaatactggacagagaaaaaattctggtgagtggaacagtgatagcagtaatagt
gaggcaagttcaacggagaggtacaagcccattcgacaggctgtgaacagggtacggaaa
ggcaagcgggggcggcctgccaggtcgtctgcaggaaatgtatcccggcaaagaaaacca
caattgtcttctggctcagagggtgacaatttctccgatagtgggagtgattatgacgag
gccagtcggagctttaaatcttacaccaaacgatcggctgcacagaaagtcagctacaag
gaggacactgatggagcgacagacagtgatgacattatcgagggcccggaagacgatgtt
aatgtggtgaaggaagatgaaaaccctgaagggattgacagaatccttgaccacagggag
gggaaaaagggagcaacaggagctaagacgacaatctacaacgtcgaggcaaacggcaac
cccaacattaccctacctgagaacacggagcgtgaaacacagttctttatcaaatggaag
ggctgggcccacatccacaacacatgggaaaacgaggaaactctgcgggaacaaaaactc
agtgggctgaaaaggcttgataactacattaaaaagatggatgaaattaatgaatggaag
cggtttgcttcgccggatgacatagaatactatgatgtccagcaagaatataacgaagat
ctgtataaaaactgtctcgccgtggaaagaatcattgcgcactctgatgagaaaaacagc
aatgaagggaatggtttccctgattacttgtgtaaatggacaggcttgccttattctgag
gtttcctgggaggacggggaacttctgtctgccaagtttcaggacagaattgacaattat
atggtgcggaataagtcacagaaaatccccacaaagctgtctcgagtgttaaagaaccgt
ccaaaatacctgccgctgaaaaaccagcccagttttattggtagcgatgacctacagtta
cgagactatcagcttgatggtgtcaactggcttatgcactcctggtcaaaggagaacagt
gttatacttgctgatgagatgggtctcggtaagacaatccagaccattggcttcgtgtcc
atactatacaacatgtaccaattgtacgggccgttcatcattgtcgttcccctctccaca
gtggtagcctggcagcgagagtttgagaactggtgccctgacataaacgttgtcatatac
cttggtgatgtgaacagtagaaacattatccgggatcatgaatggtgtcatcctggaaac
aagagattaaagttcaatgtcgtggtcaccacgtacgagatcctgctgaaagataaggcc
ttccttggtgctgtaagctgggcagagctgattgttgatgaagcccatcgcctgaagaac
actgactccctcctctaccgaacgcttatggaattcaaggctaaccacaaggttctcatc
accggtacaccgctacagaactccctcaaggagttgtgggctctactgcacttcatcatg
cctctcaagttccctaagtggtcggagtttgaagaaaagcactcacgagcggacaagacc
ggctttacccagctacacaagcagctagaggcctttcttctccggcgggtgaaaaaggat
gtggagaaatcactgccagccaaaacagaacagatcctccgtgttgagatgtcctccaaa
cagaaacagtattacaaatggatcttaacaaaaaattacaaggagttgaacaagggggtc
aagtcaagtatctcatctttcgtgaacattatcatggagttgaagaaatgctgtaaccac
cagctgcttgtgcggccagaagacagcgaggaaaactctgtcgaccaccttcagaacctg
atccgtgggagtggtaagctgatcctgctggacaagctgcttctgcgactaaaggagaag
ggccatcgtgttctcatattttcacagatggtgcgccttctagacattctcagcgagtac
cttcagatgcgacacttccagtttcagaggttggatggctctatccgaggtgatcttcgc
aaaacagcccttgatcattttaatgcagaaggttctcaggacttctgtttcttgctgtca
actcgtgcaggaggtctaggtgtaaacctggcaactgcagatactgtgataatatttgat
agcgactggaaccctcagaacgacctgcaggcacaggcaagggctcacaggattggccag
aaaaaccaggtgtcagtgtaccgactggtgacaaagaacagtgtagaggaggaaattgtg
gagagagctaaacggaaaatggtgctggatcaccttgttattcagcgtatggacacaact
ggccgtacggttttgaataagggcggtggagatctcactaataccaagacaccattcagc
aagaatgagctggcttccatactcaaatttggtgctgaagagttgtttaaagaagataat
gatgacgaggaaccccaggtagacatagatgagatcttgcagcaggctgagactcgagag
atggctgaaaataacggggtcggagatgaacttctctcacagttcaaaattgtaaccttt
gaaaaccttgaggatgacgagattgaatccactggtaaggactggtcatccataattccc
aaaaacgacatagaaagagtagaagaagaagaacgacaggatttacttctcgaactcaac
cttcccccgcggcaacgcactaccctaaagcagcttgagaagagctatgacagtgacaag
gaaaacgacgacgatgatgatgatgaggattcagggagtgatgatgatcggccaaagaaa
cggggccggccccgagctggcggcaagaatgaccagataaagggcttcactaatgcggag
atacgacgctttgtgaagagctacaaaaagtttggggatcctctctcaaggttagatgac
atagcgtgtgacgcggagctccaggagaagtcggagtcagatctcaggaaaatggcggaa
ctgctcaagtcccagtgtgatcacgcttttaaggagttcaactccaaaaaacagctggag
gaacagaatggggagactcctgcaagcaagaagggtccacgaagcatcaactgtaagatt
gcgagtgtgatagtaaatgttcagtcgattgtgaaggctggtggagatctggaacctcta
gtcagatacatacccaagacgaagtctgaaaagaaaaagttccgtatagacttccactgc
aaggctggtaactttgactgtccctgggatgtggaggaggactcggcactgctcaaggga
atctatgattacggtatgggtaactgggagcagatcaagatggaccaggagcttggcttg
tacagtaagatcctgccagatggggacaagaaaccccaggcgaaacatctccagacccgt
gcagactacctgctacgactgctgaagaaacacctggatgggacaggggttgtctcgagg
ccttctgggagaggtcgaaaaagcaagaaattgatgaagtccaaagcagaagtgccggat
tatgtggatgattccgactctagtgctaaaagtgctaatgacacaaaccaaactgccccg
gatcataccggcacccaaaaatcacataaaaaggctgacaaaagtgataaagacactagc
aaaaagtcagacgatcatgatcatcatcaccaccaccatcatcataataaacaggagaag
aggaagaaagagaaagagaaaaagaagaaaatgaaagagaaagcggggccaatgcatttc
acagctatcaatgaacctgtagcgatctcacaagacggcgagtttgatggagaactgcct
gaagaagtcttcaaagagtgtaaggagcgtatgcgtcccgtgaagcgttccctgaagcac
ctggatcggcccgaggagggtttatcagaccgagatcaggtgatccacacacgacagtgc
ctgctcaagataggggatcgaatcaacgaatgtctcacagagatgaacaaccctgagaag
attaaacagtggagatgctacctgtggatatttgtgtcaaagttcaccgagtttgatgct
cggaaactccacaaattgtataaacatgccctgaagaagagggacgaggaaagagacaaa
gatgagaattcccatcagtcgaaatctcagcaaggcaatgataatcaccacaagagatcg
catgaagacggcaagtcctacaatagtaaacggtctcacattgaacatgacagttcaagc
aacagtaactggtcccgtccaagcaccaccgcgccccattccctcgctaccaccacattc
caaaatgcatttaacaactcatcggtgactgtatccagcccctctgaccgttggaagcag
tcaagtccccttgatcagcgtgcccaacctgagaaaaaaccttacagccgaaataggtat
gaaggtggcaacagttcctactccagaggggctggaggtcagtaccctcaccacgatcat
ccccgcttctccgaccacaaacctcactacggcggtgataacaaggggtttaatgagcgg
cgtgagggtggtcatatcagtggttattccaagagagagtatggccccaattctaacccc
tatggcttccgcgacccgcgtaatgaggggatgcggtctgattaccggaaatatggcagt
ggtgggggctatcgggactaccctcccgcttccgggcgggactcccatgttaacagcagt
ttttcacatgatcgaaaaagaaggaatgagtacagctacgaccgggaggctcgagaccca
cgctatcgcaaggaacagagactggatgacagctactcgtag

DBGET integrated database retrieval system