Mya arenaria (softshell): 128227816
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Entry
128227816 CDS
T09995
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03013
Nucleocytoplasmic transport
maea03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128227816
03015 mRNA surveillance pathway
128227816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128227816
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128227816
5.6.2.5 RNA 5'-3' helicase
128227816
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128227816
mRNA cycle factors
Common to processing body (P body) and stress granule
128227816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
NPHP3_N
NAT10_TcmA_helicase
UvrD-helicase
AAA_16
ATPase
nSTAND3
SRP54
AAA_22
nSTAND_NTPase5
TraI_hel_assoc_N
PhoH
Motif
Other DBs
NCBI-GeneID:
128227816
NCBI-ProteinID:
XP_052794645
LinkDB
All DBs
Position
3:91380719..91398300
Genome browser
AA seq
1104 aa
AA seq
DB search
MSVDTYAPNSQTLTFLDTEEDLLGADTQGSEYDFTDFTLPSQTQSQTQASQLDQGQSQSQ
ASELPVQNGIDGNVGAITQAVGELQFEEDEEEQFFMKDLPKHACSYCGIHDPACVVYCNT
TKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHRDGPLGETVLECYNCACRNVFLLGFIPA
KADSVVVLLCRQPCATLSNLKDMNWDPSQWQPLIQDRQFLPWLVKIPADQDQLRARQISA
QQINKLEELWKDNPEAKLEDLEKPGVDEEPQQVLLRYDDAYQYQSIFGPLVKLEADYDKK
LKESQTQDNIVVRWDVGLNKKRIAYFNLPKANDEMKLMHGDELRLRYMGELHKHWSGVGH
VIKIPDNHSDEIAIELKSNAGVPAECTHNFVVDFVWKSTSFDRMQAALKTFAVDETSVWG
YIYHKLLGHEVEDVVIKCTLPKRFSAPNLPELNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATVVYHLAKQSNGQVLVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIESPVAFL
SLHNQIRNMESTPELVKLQQLKDETGELSSTDEKRYRSLKKQCERELLQNADVICCTCVG
AGDPRLGKMQFRSVLIDESTQATEPECMIPVVLGCRQLILVGDHCQLGPVVMCKKAARAG
LSQSLFERLVVLGIRPIRLQVQYRMHPAMSAFPSNIFYEGSLQNGVTPAERIRSSLDIPW
PQPDKPMFFLTCSGQEEISSSGTSYLNRTETASVEKVATRFLRSGVKPEQIGIITPYEGQ
RAYIVQYMQYSGSLNKKLYMEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDPRRL
NVALTRAKYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLNNLKESLIQFSKPRKL
VNSTNPGGRFMSNTMFDAREVLIPGSIYDRSVGYREPVVRTHDQLGFIGPERAYTGPAMN
MPVPVNMFISPMPQPFHPPQQPMQMPNNMRGRGGRGRGGKMKPPRYSQNSQLQSQGSMLS
NSQASQDVSQPFSQGPLTQGPLSMSQPFQMSQPGLSGLSQPELSQDSFLADDFKSQADGM
LSQDSTYQGDRMFYASQLSQGPFN
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgacacttacgccccaaattcgcagacattgaccttcctggataccgaggaa
gaccttctcggcgccgatacacagggatcagaatatgacttcaccgatttcacgttacct
tctcaaacgcagtcccaaacacaagcttcacagcttgatcagggacaaagccaaagtcag
gcaagtgagcttcccgttcagaatggcattgatggaaatgttggtgccatcacacaggca
gttggggaactccagtttgaggaggatgaagaggaacagttttttatgaaagatctgcca
aaacatgcttgctcctactgcggcatccatgaccctgcgtgtgtggtgtactgtaacaca
accaagaagtggttttgcaatggcaggggaaacacttccggaagccatattatcaaccac
cttgttcgagcaaaagcaaaagaggtaaccctgcacagggatgggccgctgggtgagacc
gtcctggaatgttacaactgtgcatgccgtaacgtgttcctgctcggcttcattccagcc
aaggctgactccgttgtcgtgctgctgtgcagacagccctgcgccacgctcagcaacctg
aaggacatgaactgggacccttcccagtggcagccattgatccaggaccgccaattccta
ccatggttggtcaagattccggcagaccaggaccagcttcgggctcggcagatctctgcc
cagcagatcaacaagctggaagaactgtggaaggacaacccagaggccaaactggaggac
ctggagaagcctggggtggatgaggagccacaacaggtccttctacggtatgatgatgca
taccagtaccagagcatctttggtccgctggtgaaactggaggcagactatgataagaag
ctgaaggagtctcagacccaggacaacattgtggtccggtgggatgtcggccttaacaag
aagaggattgcttactttaacctcccaaaggctaatgatgaaatgaagttgatgcatgga
gatgagttaaggcttcgctacatgggcgagctgcacaaacactggtctggagtgggtcat
gtgatcaaaataccagacaaccacagtgatgagattgccatagagctgaaaagcaatgct
ggtgtgccggctgagtgcactcacaactttgtggtcgactttgtctggaagtcaacatct
ttcgacaggatgcaggctgccttgaagacatttgcagtggatgagacatcagtgtggggc
tatatctaccacaagctgctgggtcatgaggttgaggatgtggttatcaagtgtaccctg
cccaaacggtttagtgccccaaacctcccagagctgaaccactcacaggtgtatgctgtc
aagactgtgctgcagcgaccactcagtcttatccagggtcccccggggacaggtaagaca
gtgacatctgccacagtagtgtaccacctcgccaagcagagcaacggccaggtgctggtc
tgtgctccctccaatattgctgtagaccaactcacagagaaaatacacaagactggactc
aaggtggttagactgtgtgcaaagagcagagaggcaattgagtctccagtggccttcctc
tccctgcataatcagatcaggaacatggagagcaccccggagcttgtgaagctacagcag
ctgaaggatgagactggagagctgtcctccacagacgagaaacgctatcgctctctcaag
aagcagtgtgaacgagaactcctccagaatgctgatgtgatctgctgcacgtgtgtgggt
gctggtgatccaaggctaggcaagatgcagtttcgctctgtgctgattgatgagagcacc
caggctacagaaccagaatgtatgatccctgttgtcctcggctgcagacagctgatcctg
gtaggcgaccactgccagctgggtccggtggtgatgtgtaagaaggctgcacgtgcaggc
ctgtcccaatctctgtttgagcggctggtggttcttggtatccgccccatcagactccag
gtccagtaccgcatgcacccagccatgtccgcattcccatccaacatcttctatgaaggt
tcactgcagaacggagtcactcctgctgagcgtatccggagcagcctggacatcccctgg
ccccaaccagacaagcccatgttcttcttaacatgctctggccaggaggaaatctccagt
tctggaacatcctatcttaacagaactgagactgcgtctgttgagaaggtggccactcgg
ttcctaaggtcaggtgtgaagccggagcagatcggcatcatcaccccatacgagggccaa
cgggcatacattgtacagtacatgcagtacagtggatcgctcaacaagaaactatacatg
gagatagaggttgccagtgtggatgcgttccagggacgggagaaggacttcatcatcctg
tcatgtgtccgctccaacgaacaccagggcatcggctttctaaatgacccacgccgtctc
aacgttgcactcacaagagcaaaatatggaataatcattgttggcaacccaaaggttttg
tcaaagcaacccctgtggaaccacctgttgacatactacaaggagcagaagtgcctggtg
gagggtcctctcaacaacctcaaggagagccttatacagttcagcaagccccgcaagctt
gtcaactctacaaaccctgggggcaggttcatgtccaacactatgtttgacgcccgtgag
gttctcataccaggcagcatctatgacaggagtgtagggtacagggagccagtggtgcgt
acccacgaccagcttggctttatcggtccagagcgtgcctacacgggccccgccatgaac
atgcctgtccccgtgaacatgttcatcagccccatgccacagcccttccacccgcctcaa
caacccatgcagatgccgaacaatatgcgtggtcgtggaggacgtgggcgaggtgggaag
atgaagcctcctcgctacagccagaacagtcagctgcagagccaggggtcgatgttgtcc
aacagccaagctagccaagacgtgtcacagcccttctcccagggaccccttacacagggt
cccctctccatgtcccagcccttccagatgtctcagcctggcctctcgggactctcacag
ccagaactatcgcaggacagtttcttggcggatgacttcaagtctcaggctgatggcatg
ctgtcccaggactctacgtaccagggagaccgcatgttctacgcctcgcagctgtcacag
gggcccttcaactag
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integrated database retrieval system
