Mya arenaria (softshell): 128231002
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Entry
128231002 CDS
T09995
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128231002
03036 Chromosome and associated proteins [BR:
maea03036
]
128231002
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
128231002
Chromosome and associated proteins [BR:
maea03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
128231002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
S1
Spt6_S1
HHH_9
SH2
Tex_YqgF
HHH_3
Tex_N
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
128231002
NCBI-ProteinID:
XP_052799386
LinkDB
All DBs
Position
4:complement(65884929..65909289)
Genome browser
AA seq
1509 aa
AA seq
DB search
MSLSKLDDFIVGDDGQPIRGKKKKRHIIHSDALLQEAQDIFGVDFDFDEFKEYAGEESEE
EEDEYEEEDMDEEGGTQKKEKKTRPKKGLKASASYEPEALKRAFMTEQDNVVRNTDMPER
FQLRTTPLKETEEGELEEEAEWIYKQAFRVPPISTQTFSEQDGGSFGYNKKGPTMVEKIK
KAVDFMRNKHQEVPFIAFYRKEYVEPDLNINDLWKVWHWDEKWSQLRTRKLNLIRLFERM
QSYQYEVNSDPDKVLATNVRTLTEEDIDRVRKVENMDELRDVYNHFLLYYGSDLPKMRIL
EREKRREEREEGGEGRDIDDEGDTVKHASRKSGYTICVNNKLDEIALRFGLTPEQFGENI
RDNYTRHEVDQCPMEPQEMAKDYISGQFPTAEEVLLGARHMVAMQLSHDPMVRQAVRAAF
FERARLHVVPTKQGIKVIDEAHPCYPQKYLKNKPVRDLKDEQFLRLVEAEDEKLLTISIT
MDEDTDNPNIQKYFEEIRNLYYRDEFSHLVQQWNTQRTQALERALTKILYPQFEKEIRLK
LINEAKEGILKACCRKLYNWLKVAPYEMEQQMDDDYDLDDNDTGVRVLGIAYIAERDTTA
FGCMVNGEGDVSDFIRLPNLTKRIRSQRYMEREEKEKDMERLKTFIETKKPHVIAVTAEN
IDALMIVDDIKKVIAELEQEAQMPPINVELVDNELALVYANSARADEEFREYPPVLRHAV
CVARRLQDPLIEYAQLCNQDDDILCLKYHPMQDSLPKEELLNALNLEFVNRVNEVGVDVN
RAITNSHTAVLVQFICGLGPRKGAALLRTLRQNSTRLENRTHLVTMCRMGPKVFINCAGF
IKIDTNSLGDSTEAYVEVLDGSRVHPEYYEWARKMAVDALEYDDTAEDANPAGALEEILE
SPERLKDLDLDAFAEELERQGYGDKHTTLYDIRAELNHRYKDLRTPYRSPTNEERFNMIT
KETPDTFYIGKLMLVRVVGIAHRKPHGEQLDQADPVRNEDTGLWQCPFCNKNDFPELSEV
WSHFDNGSCPGSAVGVRSRLDNGCTGFIHIKNLSDKTVTDPLERVKIGMTVHARITKIDI
DRFTLDLSTKTSDLLDKDNQWKPPKDLYYDADKEKSELEKEDEKKKLQARQTYIKRVIAH
PNFHNISYKECEKILANMDQGECIIRPSSKGADHLTVTWKVADGVLHHIDVVEQGKENAF
SLGKSLLIGNEEFEDLDEIIARHVQPMASHARDILNFKNYMDMDGGKKEVAERKLYEEKK
KYPSKIPYYLSATKQYPSKFLLCYMPRNKPRSEYISVSPEGFKYRHKSFHSLNSMMRWFK
EHFRDPIIGMGTPSGRTPMVGHTPNFSMQGVDAAAIHRAAKGLPSNIYNTLAQVAGVTPA
AGVTPRVTPGFTPAGFTPRTGFTPHTPQAGTSGYRSGVSVTPLLTPAAAATPSYQPTPKA
QWPGATPRTPRSSGQSSSKAGTDWAKAAEMWAKHKKLAPGTPRSPAVRQSPRGRVGQSPA
GDATPLFDE
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgtcaaaattggatgatttcattgttggagatgatggtcaacccatcaggggg
aagaaaaagaaaaggcacatcatccactcagatgcccttctgcaggaggcccaggacatt
tttggtgtggactttgattttgatgagtttaaggagtacgccggggaggaatctgaggag
gaggaagatgagtacgaggaagaggacatggatgaagaggggggcacacagaagaaagag
aaaaagactcgaccaaagaagggactcaaggcctccgcttcttatgagccggaggcattg
aagagggcgtttatgacagagcaggacaatgttgtccgaaacacagacatgcccgagcga
tttcagttgaggaccacgcctctgaaggagactgaagaaggggagttggaggaggaggca
gagtggatttacaagcaggccttccgtgtaccacccatatccacacagacattctcagag
caggatgggggcagttttggttacaacaagaaaggccctaccatggtagagaagataaaa
aaagcagtggacttcatgagaaacaaacaccaagaggtgccgtttattgctttctaccgc
aaagagtatgtggaaccagatctgaacatcaatgatctatggaaggtgtggcactgggat
gaaaagtggagccagttacgtaccaggaagctgaacctgatccgactgtttgagcgcatg
cagtcttaccagtatgaggtgaactctgacccggataaggttcttgccaccaacgtgcgg
acactcacagaagaggatattgatagggtgcgtaaggtggagaatatggatgagctgcgt
gacgtgtacaaccactttcttctctactacggctccgaccttcccaagatgcgcatcctg
gagcgagaaaaacggcgtgaagagcgtgaggaaggtggtgagggacgggatattgatgat
gagggagacacggtgaaacacgcctcccgcaagtctggatatactatctgtgtcaacaac
aaactggatgagatagccttgaggtttggtctaactccggagcagtttggtgagaacatt
cgagacaactacacaaggcatgaagtagatcagtgccctatggagccacaagaaatggcc
aaagactatatctctggtcaattcccaacagcagaggaggtgttgctaggagctcgtcac
atggttgccatgcagctgtcacatgaccctatggtgcgtcaggctgtccgggcagcattc
tttgaacgggcacgattacatgttgtcccaacaaaacagggaataaaggtgatagatgaa
gcccacccatgctacccacagaagtacctgaagaacaagcctgtgcgtgacctgaaggat
gagcagttcttgcgactcgtggaggcagaggatgagaaactcctcaccatctccatcacc
atggacgaggacacggacaaccctaacatacagaaatactttgaggagatcaggaacctc
tactacagagatgagttcagccacctggtgcagcagtggaacacacagcgaacacaggcc
ctggagagagccctcaccaagatcctgtacccacagtttgagaaggaaatccgccttaaa
ctcattaatgaggctaaagagggaattctcaaggcatgttgtcgtaagctgtacaactgg
ctgaaggtggcgccctatgagatggaacagcagatggatgatgactacgacctcgatgat
aatgacactggcgtcagggtccttggcattgcttacatagctgagagggacacaacagct
tttggatgcatggtgaacggggagggggatgtatcggacttcatccgcctgcccaacctc
acaaagaggatccgctcacagagatacatggagagagaggaaaaagaaaaagacatggaa
agattgaagaccttcatagaaaccaaaaagccacatgtgatagcagttacagctgaaaac
attgatgcattgatgatcgttgatgacatcaagaaggtgatagctgagctcgagcaggag
gcccagatgccgcccatcaacgttgagcttgtagataacgagctagcccttgtttacgcc
aacagtgctcgtgctgatgaagagttccgtgagtatccacccgtgttgcgtcatgctgtg
tgtgtggctcggaggttgcaggatcctctcattgaatacgcccaactgtgtaaccaggac
gatgacatactctgtctcaaatatcatcccatgcaggactctctgccaaaagaagagctg
ttgaatgcgttaaacctggagtttgtgaaccgggtgaatgaggtgggcgtggatgtgaac
cgggccataaccaactctcacactgctgtccttgtgcagtttatttgtggcctggggcca
aggaaaggggctgctctcctcaggacattacgccaaaacagcactcggctggagaacaga
actcatctagtcaccatgtgtagaatgggaccaaaggttttcatcaactgtgctggattc
atcaaaatagacaccaactcacttggtgacagcacggaggcatatgtggaggttttggat
ggttctcgtgtgcacccagagtactatgagtgggcaagaaagatggctgtcgacgcgctt
gaatatgacgacacagcggaggatgccaatccagccggggcccttgaggaaatccttgag
agcccagagaggcttaaagaccttgaccttgatgcctttgcagaggaacttgagagacag
ggctatggtgacaagcacaccactctgtatgacatcagagctgagttgaaccacaggtat
aaggatttacgaaccccctaccgatcacctaccaatgaggaacgattcaacatgattacc
aaagaaacaccagacacattctacataggcaagcttatgttagtgcgagtggttggtatc
gctcaccggaaaccccacggtgagcagctggaccaggcagaccctgtcaggaacgaagat
actggtctctggcagtgcccattctgtaacaagaatgacttccctgagctcagtgaggta
tggagtcactttgacaatggaagttgtcctggctctgcagttggggtccgaagtcgcctt
gacaatggctgcaccggtttcatacacatcaaaaatcttagtgacaaaactgttacagac
ccgctggagagagttaagatcggaatgactgtccatgcacgaatcacaaagattgacatt
gaccgcttcacattggatctttccacaaagacttcggacctactagacaaggacaaccag
tggaaacctcccaaagacctttactatgatgctgacaaagagaaaagcgagttagaaaaa
gaggatgagaaaaagaaattgcaagccaggcagacatacataaagcgtgtgatagcacac
cctaacttccacaacatcagctacaaggagtgtgagaagatcttggccaacatggaccag
ggagagtgcattatcaggcccagtagtaagggtgcagaccacctgactgtgacatggaag
gtagctgatggggtcttacatcacatagatgtagtggagcagggcaaggagaatgccttt
agtctcggcaagtccctactcatcggtaatgaggagtttgaagatctggatgaaatcata
gccagacatgttcagcccatggcatcccatgcccgtgacattctcaacttcaaaaattac
atggacatggatggaggaaagaaagaggttgcagaaaggaaactgtacgaggaaaagaaa
aaatacccatctaagattccctactacctgagtgccacaaagcaatatcccagcaagttc
ctgctgtgttacatgcctcgaaacaagccacgttcagaatacatcagcgtgagcccggaa
ggcttcaagtaccgtcacaagagcttccattccctcaactcaatgatgcgctggttcaag
gagcacttccgggatcccataattggcatgggtacacccagtggtagaacacccatggtt
ggccatactccaaacttcagcatgcaaggtgtggatgctgcagccatccatcgtgcagca
aagggtcttcccagcaatatttacaacacgttggcccaggtggcgggcgtcactcctgct
gctggggtcacaccaagggtcacacctggattcacacccgcagggttcacccccaggacg
ggcttcactccacacacaccacaggctggcaccagtggatacaggtctggagtaagtgtg
accccactgctgaccccagcagctgctgccacaccctcctatcagccaaccccgaaggcc
cagtggccaggtgctacacccaggaccccccgcagcagtggacaatctagtagcaaggcg
ggcacagactgggcaaaggctgcggagatgtgggccaagcacaaaaagttggccccaggg
acccctcgcagtcccgcagtgcgtcagtcccccaggggtcgcgtcggacaatctcccgcg
ggagacgccacaccactgtttgatgagtga
DBGET
integrated database retrieval system
