Mya arenaria (softshell): 128231778
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Entry
128231778 CDS
T09995
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
maea
Mya arenaria (softshell)
Pathway
maea03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128231778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128231778
03036 Chromosome and associated proteins [BR:
maea03036
]
128231778
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
128231778
Coactivators
SAGA/TFTC/STAGA complex
128231778
Chromosome and associated proteins [BR:
maea03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
128231778
STAGA complex
128231778
TFTC complex
128231778
SAGA complex
128231778
SLIK complex
128231778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
TFIID_NTD2
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_HPS5
WDR54
PROPPIN
Beta-prop_DCAF12
WD40_like
Beta-prop_Vps41
PEP5_VPS11_N
RMC1_N
Mala_s_1-like
WD_LRWD1
Beta-prop_RIG_1st
DUF5508
Motif
Other DBs
NCBI-GeneID:
128231778
NCBI-ProteinID:
XP_052800923
LinkDB
All DBs
Position
4:complement(72125723..72143129)
Genome browser
AA seq
603 aa
AA seq
DB search
MKRTKYEHLHSTVTQYLKRRQFSDSETSHKKECRWQQPLAGMALHGSAAGEATGTNSLAF
SSITGDPGLCEQQYNRLKAFLSEQSSLFGADVHVILFPVFVHIYIELLSNGHKTQAHKFF
ARHNTSFKVVEGSQSTLQQLSGLYSKADMISCKEAQAFKDMKYKVTLNKEKFETVHRYLK
NDDNMVLLQVLNQHMQLDVAGVYSRSSTPFQLVKTDEGPVLGLNDDKPETRQQQLISPAV
IPDNKVVKDDQALMGLKQVIKEVRERPPGLPSICFYTFLNAHQGMCCASTSHNDGYLSGG
FEDSSVKLWRLTPGTFPQIDNSDGPSVIRLAADFPDTDEEDQEEKRSPERECIWLGGHTG
SVYQTAFTWDSNFLLTCSDDTTVRLWDLEKQTNAAIYRGHNYPVWDVDTSVVGDHFVSCS
HDQTAKLWSTERTYPLRSFVGHSYDVDCVRFHPNTNYIATGSGDKTVRMWSVQDGKSVRL
LSGHKSSVLSLAFSPNGMLLASAGEDRRVRVWDLRTGTALKEFRGHTDTIYALAFNQNSS
MLASGGLDSCIRIWDLRKNTSTSLASSDNHNSAELLGAFPTKSTPVVYLNFNSHNVLLAA
GAN
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaactaaatacgagcatttacactccactgtcacacaatatttgaaaagaaga
caattttcagatagcgagaccagtcataagaaggagtgtagatggcagcagcccctggca
ggcatggctctgcatgggagtgcggcaggggaagcaacgggtaccaacagtcttgccttt
tccagcatcactggggaccctggcctttgtgaacagcagtataataggttgaaggcattt
ctaagtgagcaaagttcattgtttggagcagacgtccatgtcattctgttcccggtgttt
gtgcatatctacattgagctgctcagtaatggacacaaaacacaagctcacaagtttttt
gctcgtcacaacacatcattcaaggtcgttgaaggcagccagtctaccctccagcaactg
tcaggactttattcaaaggcagacatgatctcatgtaaagaggcacaagcattcaaagat
atgaagtacaaagtgactttaaataaggaaaagtttgagactgtacacagatacctaaag
aatgatgacaatatggttctcctccaagttttgaatcaacacatgcagttagatgttgca
ggcgtgtacagtagatcttctaccccatttcagctggttaagacagacgagggtccggta
ctcggtctcaatgatgacaagccggagacgcggcagcagcagctaatctcgcctgcggtt
attccggacaacaaggtggtgaaggatgaccaggcattgatggggttgaagcaggtgatc
aaggaggtgcgggaacgacccccgggacttccctccatctgcttctacactttcctcaat
gctcaccaggggatgtgttgtgcttcaacatcccataatgatggttacctcagtggagga
tttgaggacagcagtgtgaagttgtggcgtctcactcctggcacattcccacaaattgac
aatagtgatggaccttctgtcattcgtcttgctgcggattttccagacacagatgaagaa
gatcaggaagagaagagatctcctgagagggagtgtatatggctcggtggccacactggg
tcagtgtaccagactgccttcacctgggactctaacttcctccttacatgctcggatgat
accacagtacggctgtgggacctagagaagcagacaaatgccgccatctacagaggacat
aactacccagtctgggatgtagacacaagtgttgttggagaccactttgtgtcctgctcc
catgaccagactgccaaactctggtcaactgagaggacgtacccactacgcagctttgtt
ggacactcctatgatgttgattgtgtacgtttccatcccaatactaactacatagcgacg
ggctcgggtgacaagacagtgcggatgtggagtgtgcaagacgggaagtctgtccgtctt
ctgtcaggacacaagagctctgttctctcccttgccttttcccctaatggcatgctgctg
gcatcggctggcgaggatcgtcgtgtgcgtgtgtgggacctgagaacgggaaccgctctc
aaagagtttcggggccacacggacaccatctacgccctcgcctttaatcagaattcttcc
atgctagcatcaggtgggttggacagctgtattcgaatctgggacctcagaaagaacacc
agcacatcccttgcctcatcagacaatcacaactcagcagagctcctgggtgctttccca
accaagtcaaccccagttgtctatctcaacttcaactctcacaatgttctccttgcagca
ggggcaaattga
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