Mya arenaria (softshell): 128231817
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Entry
128231817 CDS
T09995
Name
(RefSeq) LOW QUALITY PROTEIN: transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128231817
03036 Chromosome and associated proteins [BR:
maea03036
]
128231817
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
128231817
Chromosome and associated proteins [BR:
maea03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
128231817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
S1
Spt6_S1
HHH_9
SH2
Tex_YqgF
HHH_3
Tex_N
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
128231817
NCBI-ProteinID:
XP_052800977
LinkDB
All DBs
Position
4:complement(66508944..66535023)
Genome browser
AA seq
1702 aa
AA seq
DB search
MDFFEDEAEVSDHSSSASASDAGSDSDVSDSSVKQKKVKKDKKKKKVVVSDDDDDDEDED
IDEAAIAEEMKDFINEEEEEEGGEEEEEGPGAEKRKRESEEEEDDQLEDEDYDLIEENLG
IKVKRSKKLKRIKRVVTDDEDSEGERERGEDERERIANELFEGDEDDGEEEDDARSRMTK
AETEVQDLTVEGSEEEDELDDFIVGDDGQPIRGKKKKRHIIHSDALLQEAQDIFGVDFDF
DEFKEYAGEESEEEEDEYEEEDMDEEGGTQKKEKKTRPKKGLKASASYEPEALKRAFMTE
QDNVVRNTDMPERFQLRTTPLKETEEGELEEEAEWIYKQAFRVPPISTQTFSEQDGGSFG
YNKKGPTMVEKIKKAVDFMRNKHQEVPFIAFYRKEYVEPDLNINDLWKVWHWDEKWSQLR
TRKLNLIRLFERMQSYQYEVNSDPDKVLATNVRTLTEEDIDRVRKVENMDELRDVYNHFL
LYYGSDLPKMRILEREKRREEREEGGEGRDIDDEGDTVKHASRKSGYTICVNNKLDEIAL
RFGLTPEQFGENIRDNYTRHEVDQCPMEPQEMAKDYISGQFPTAEEVLLGARHMVAMQLS
HDPMVRQAVRAAFFERARLHVVPTKQGIKVIDEAHPCYPQKYLKNKPVRDLKDEQFLRLV
EAEDEKLLTISITMDEDTDNPNIQKYFEEIRNLYYRDEFSHLVQQWNTQRTQALERALTK
ILYPQFEKEIRLKLINEAKEGILKACCRKLYNWLKVAPYEMEQQMDDDYDLDDNDTGVRV
LGIAYIAERDTTAFGCMVNGEGDVSDFIRLPNLTKRIRSQRYMEREEKEKDMERLKTFIE
TKKPHVIAVTAENIDALMIVDDIKKVIAELEQEAQMPPINVELVDNELALVYANSARADE
EFREYPPVLRHAVCVARRLQDPLIEYAQLCNQDDDILCLKYHPMQDSLPKEELLNALNLE
FVNRVNEVGVDVNRAITNSHTAVLVQFICGLGPRKGAALLRTLRQNSTRLENRTHLVTMC
RMGPKVFINCAGFIKIDTNSLGDSTEAYVEVLDGSRVHPEYYEWARKMAVDALEYDDTAE
DANPAGALEEILESPERLKDLDLDAFAEELERQGYGDKHTTLYDIRAELNHRYKDLRTPY
RSPTNEERFNMITKETPDTFYIGKLMLVRVVGIAHRKPHGEQLDQADPVRNEDTGLWQCP
FCNKNDFPELSEVWSHFDNGSCPGSAVGVRSRLDNGCTGFIHIKXLSDKTVTDPLERVKI
GMTVHARITKIDIDRFTLDLSTKTSDLLDKDNQWKPPKDLYYDADKEKSELEKEDEKKKL
QARQTYIKRVIAHPNFHNISYKECEKILANMDQGECIIRPSSKGADHLTVTWKVADGVLH
HIDVVEQGKENAFSLGKSLLIGNEEFEDLDEIIARHVQPMASHARDILNFKNYMDMDGGK
KEVAERKLYEEKKKYPSKIPYYLSATKQYPSKFLLCYMPRNKPRSEYISVSPEGFKYRHK
SFHSLNSMMRWFKEHFRDPIIGMGTPSGRTPMVGHTPNFSMQGVDAAAIHRAAKGLPSNI
YNTLAQVAGVTPAAGVTPRVTPGFTPAGFTPRTGFTPHTPQAGTSGYRSGVSVTPLLTPA
AAATPSYQPTPKAQWPGATPRTPRSSGQSSSKAGTDWAKAAEMWAKHKKLAPGTPRSPAV
RQSPRGRVGQSPAGDATPLFDE
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atggacttttttgaagatgaggctgaagtctctgaccacagcagtagtgcttcggcatct
gatgctgggtcagactcagatgtctcagattcaagtgtgaaacagaagaaggtaaagaag
gacaaaaagaagaaaaaggtcgttgtatcagatgatgatgatgacgacgaagatgaagat
attgatgaggcagcaattgctgaggagatgaaggattttattaatgaggaggaggaagaa
gagggtggagaagaggaggaggagggccctggcgcagagaaacgcaaacgtgagtctgag
gaagaggaggatgaccagctagaggatgaggattacgacctcattgaggaaaacctcggc
ataaaagtgaaacggtccaaaaagttgaagcgtatcaagcgtgtggtgacagatgatgag
gacagtgaaggagaaagggagcgaggtgaggacgagagggagaggatcgccaatgagttg
tttgagggcgacgaggatgatggagaggaggaggacgatgctcggtcccgtatgaccaag
gccgagactgaggtgcaggacctcactgtggagggatcagaggaggaggatgaattggat
gatttcattgttggagatgatggtcaacccatcagggggaagaaaaagaaaaggcacatc
atccactcagatgcccttctgcaggaggcccaggacatttttggtgtggactttgatttt
gatgagtttaaggagtacgccggggaggaatctgaggaggaggaagatgagtacgaggaa
gaggacatggatgaagaggggggcacacagaagaaagagaaaaagactcgaccaaagaag
ggactcaaggcctccgcttcttatgagccggaggcattgaagagggcgtttatgacagag
caggacaatgttgtccgaaacacagacatgcccgagcgatttcagctgaggaccacgcct
ctgaaggagactgaagaaggggagttggaggaggaggcagagtggatttacaagcaggcc
ttccgtgtaccacccatatccacacagacattctcagagcaggatgggggcagttttggt
tacaacaagaaaggccctaccatggtagagaagataaaaaaagcagtggacttcatgaga
aacaaacaccaagaggtgccgtttattgctttctaccgcaaagagtatgtggaaccagat
ctgaacatcaatgatctatggaaggtgtggcactgggatgaaaagtggagccagttacgt
accaggaagctgaacctgatccgactgtttgagcgcatgcagtcttaccagtatgaggtg
aactctgacccggataaggttcttgccaccaacgtgcggacactcacagaagaggatatt
gatagggtgcgtaaggtggagaatatggatgagctgcgtgacgtgtacaaccactttctt
ctctactacggctccgaccttcccaagatgcgcatcctggagcgagaaaaacggcgtgaa
gagcgtgaggaaggtggtgagggacgggatattgatgatgagggagacacggtgaaacac
gcctcccgcaagtctggatatactatctgtgtcaacaacaaactggatgagatagccttg
aggtttggtctaactccggagcagtttggtgagaacattcgagacaactacacaaggcat
gaagtagatcagtgccctatggagccacaagaaatggccaaagactatatctctggtcaa
ttcccaacagcagaggaggtgttgctaggagctcgtcacatggttgccatgcagctgtca
catgaccctatggtgcgtcaggctgtccgggcagcattctttgaacgggcacgattacat
gttgtcccaacaaaacagggaataaaggtgatagatgaagcccacccatgctacccacag
aagtacctgaagaacaagcctgtgcgtgacctgaaggatgagcagttcttgcgactcgtg
gaggcagaggatgagaaactcctcaccatctccatcaccatggacgaggacacggacaac
cctaacatacagaaatactttgaggagatcaggaacctctactacagagatgagttcagc
cacctggtgcagcagtggaacacacagcgaacacaggccctggagagagccctcaccaag
atcctgtacccacagtttgagaaggaaatccgccttaaactcattaatgaggctaaagag
ggaattctcaaggcatgttgtcgtaagctgtacaactggctgaaggtggcgccctatgag
atggaacagcagatggatgatgactacgacctcgatgataacgacactggcgtcagggtc
cttggcattgcttacatagctgagagggacacaacagcttttggatgcatggtgaacggg
gagggggatgtatcggacttcatccgcctgcccaacctcacaaagaggatccgctcacag
agatacatggagagagaggaaaaagaaaaagacatggaaagattgaagaccttcatagaa
accaaaaagccacatgtgatagcagttacagctgaaaacattgatgcattgatgatcgtt
gatgacatcaagaaggtgatagctgagctcgagcaggaggcccagatgccgcccatcaac
gttgagcttgtagataacgagctagcccttgtttacgccaacagtgctcgtgctgatgaa
gagttccgtgagtatccacccgtgttgcgtcatgctgtgtgtgtggctcggaggttgcag
gatcctctcattgaatacgcccaactgtgtaaccaggacgatgacatactctgtctcaaa
tatcatcccatgcaggactctctgccaaaagaagagctgttgaatgcgttaaacctggag
tttgtgaaccgggtgaatgaggtgggcgtggatgtgaaccgggccataaccaactctcac
actgctgtccttgtgcagtttatttgtggcctggggccaaggaaaggggctgctctcctc
aggacattacgccaaaacagcactcggctggagaacagaactcatctagtcaccatgtgt
agaatgggaccaaaggttttcatcaactgtgctggattcatcaaaatagacaccaactca
cttggtgacagcacggaggcatatgtggaggttttggatggttctcgtgtgcacccagag
tactatgagtgggcaagaaagatggctgtcgacgcgcttgaatatgacgacacagcggag
gatgccaatccagccggggcccttgaggaaatccttgagagcccagagaggcttaaagac
cttgaccttgatgcctttgcagaggaacttgagagacagggctatggtgacaagcacacc
actctgtatgacatcagagctgagttgaaccacaggtataaggatttacgaaccccctac
cgatcacctaccaatgaggaacgattcaacatgattaccaaagaaacaccagacacattc
tacataggcaagcttatgttagtgcgagtggttggtatcgctcaccggaaaccccacggt
gagcagctggaccaggcagaccctgtcaggaacgaagatactggtctctggcagtgccca
ttctgtaacaagaatgacttccctgagctcagtgaggtatggagtcactttgacaatgga
agttgtcctggctctgcagttggggtccgaagtcgccttgacaatggctgcaccggtttc
atacacatcaaanatcttagtgacaaaactgttacagacccgctggagagagttaagatc
ggaatgactgtccatgcacgaatcacaaagattgacattgaccgcttcacattggatctt
tccacaaagacttcggacctactagacaaggacaaccagtggaaacctcccaaagacctt
tactatgatgctgacaaagagaaaagcgagttagaaaaagaggatgagaaaaagaaattg
caagccagacagacatacataaagcgtgtgatagcgcaccctaacttccacaacatcagc
tacaaggagtgtgagaagatcttggccaacatggaccagggagagtgcattatcaggccc
agtagtaagggtgcagaccacctgactgtgacatggaaggtagctgatggggtcctacat
cacatagatgtagtggagcagggcaaggagaatgcctttagtctcggcaagtccctactc
atcggtaatgaggagtttgaagatcttgatgaaatcatagccagacatgttcagcccatg
gcatcccatgcccgtgacattctcaacttcaaaaattacatggacatggatggaggaaag
aaagaggttgcagaaaggaaactgtacgaggaaaagaaaaaatacccatctaagattccc
tattacctgagtgccacaaagcaatatcccagcaagttcctgctgtgttacatgcctcga
aacaagccacgttcagaatacatcagcgtgagcccggaaggcttcaagtaccgtcacaag
agcttccattccctcaactcaatgatgcgctggttcaaggagcacttccgggatcccata
attggcatgggtacacccagtggtagaacacccatggttggccatactccaaacttcagc
atgcaaggtgtggatgctgcagccattcatcgtgcagcaaagggtcttcccagcaatatt
tacaacacgttggcccaggtggcgggcgtcactcctgctgctggggtcacaccaagggtc
acacctggattcacacccgcagggttcacccccaggacggggttcactccacacacacca
caggctggcaccagtggatacaggtctggagtaagtgtgaccccactgctgaccccagca
gctgctgccacaccctcctatcagccaaccccgaaggcccagtggccaggtgctacaccc
aggaccccccgcagcagtggacaatctagtagcaaggcgggcacagactgggcaaaggct
gcggagatgtgggccaagcacaaaaagttggccccagggacccctcgcagtcccgcagtg
cgtcagtcccccaggggtcgcgtcggacaatctcccgcgggagacgccacaccactgttt
gatgagtga
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integrated database retrieval system
