Mya arenaria (softshell): 128232156
Help
Entry
128232156 CDS
T09995
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128232156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128232156
Enzymes [BR:
maea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
128232156
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128232156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
128232156
NCBI-ProteinID:
XP_052801517
LinkDB
All DBs
Position
4:complement(65529698..65556889)
Genome browser
AA seq
544 aa
AA seq
DB search
MVEILSSSFDEKFAEIEQAIRSCDYIAIDTEFTGLRLNEQVKSSLFDDGAERYRKLRKTV
SQITMCQIGISTFTRDRKQNSLYTAKTFNIPIYPRSFGPIDEKFVCQASSFQFLTRYKFD
FNKFVYEGVSFLNEVQEREVREHIASKAMFTGLERDLDEFAIQKICSRVADWLVSKEEEK
TFTLKQTETEGMPMYVLSMELRGRFPSIWTTIDNDGKLISIERIGLEERQRFEEAEKALQ
WKQEEQLVLKMLGFTRVFRVMKQCKKPLLGHNMLMDLMLMYDKFHRPLPVSYSEFKATLH
AFFPWIYDTKHVALRLRGKLEESGLLQNTSLSELYTDIESEKGRDLVIHPPAVVHAEGFD
RYRDGFLPHEAGFDAYMCGFVFLRYAHIITFMDVKSSDVIPCMFRRYLQAMEDYCNRINI
IRARVNNINLDGADYKSQKPEFLFVKSRFMKKRLNIDQLAKWFSPYGNVDLKLYGKNQAL
AATNSFKCSKDILKAFKQHNSIFVTKYSVWRHSPVVRGILWSGVLISGGLCIWALLGTTD
NKKP
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaatcctaagtagttctttcgatgaaaagtttgctgaaatagaacaagcaatc
agaagctgtgattatattgctattgacactgagttcacaggcctgagattgaatgagcaa
gtcaaatcaagtctatttgacgatggtgcagagcgctataggaagctgagaaaaacagtg
tcccaaattacaatgtgccagataggaatatcaacatttaccagagaccgaaaacagaac
agcctgtatactgcaaagactttcaacataccaatatacccccgctcgtttggtccgatt
gatgaaaagtttgtgtgccaggcatccagttttcagtttttgacccgctacaagtttgat
ttcaacaagtttgtgtatgagggagtgtcatttctcaatgaagtccaggagcgagaggtc
cgggagcatattgccagtaaggccatgtttacagggctggaaagagatctggatgagttt
gctatacagaagatctgttctcgtgtggcagattggctggtcagtaaagaagaggagaag
acttttacccttaagcagacagaaacagagggtatgccaatgtatgtgttgagtatggag
ctgagagggagatttccctccatttggacaaccattgataatgatggcaaactgatcagt
attgagcgtatagggttggaggagcgtcaacgtttcgaggaggcagagaaggcgttacaa
tggaaacaagaggagcaactcgtactcaaaatgcttggctttacacgagtcttccgggtc
atgaagcaatgcaagaagcctctgctgggtcacaacatgttgatggacctgatgctgatg
tatgacaaattccaccgcccactacccgtgtcgtattctgagttcaaggcaaccctacat
gccttctttccctggatatacgacactaaacatgttgctcttaggctcagagggaaactg
gaggagtcgggattgttgcagaacaccagtctgtcggaactgtatacggatattgaaagt
gagaaaggtcgagacttggtcatacatcccccagctgtagttcatgctgaagggtttgac
agatatcgcgatggtttcctacctcatgaagctggttttgatgcttatatgtgtggtttt
gtgttcctgagatatgcacacatcataaccttcatggatgttaaatcctccgatgtgata
ccgtgcatgttccggcgttacctccaggcgatggaagactactgcaacagaatcaacatc
atacgagccagagtcaacaatataaatctagatggggctgactacaaatctcaaaagcca
gagttcttgtttgtgaagagcagatttatgaagaaaagactcaatattgatcagctggca
aagtggttttctccgtatggcaatgtagacttaaaactgtatggcaagaaccaagcactg
gcagccaccaacagtttcaaatgttccaaggacattctgaaggcctttaaacagcacaac
agcatctttgtgaccaagtacagtgtgtggagacattcacctgtggtccgtggaatactt
tggtcaggggtgttgatctctggaggactgtgtatatgggcattactgggcacaacagac
aacaaaaagccttga
DBGET
integrated database retrieval system
