Mya arenaria (softshell): 128232383
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Entry
128232383 CDS
T09995
Name
(RefSeq) PMS1 protein homolog 1-like
KO
K10864
DNA mismatch repair protein PMS1
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maea03400
]
128232383
DNA repair and recombination proteins [BR:
maea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
128232383
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HMG_box_2
CHDNT
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
128232383
NCBI-ProteinID:
XP_052801862
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Position
1:complement(54738842..54755950)
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AA seq
915 aa
AA seq
DB search
MRDRQLAGSLCSVSDLTITSKNRSEEVGHTFSFDHHGNITSQQPSHIAQGTVMVACNLFK
HLPVRRQIYNAVKKKKEELKKIEELLYAYGIIHPGARIILRHNKEIVWQKTGVPDTRAAL
SLVLGRSVVQLMEQHSVQDKDTNICVECFLPLSDSDVMATSRATNDRSFLAVNNRPVVLK
ELEKVLKQYYNHERSSESRHPVYFLHLKLSTSDLDINVDPNKTRVFLHCQAEVLKLLTGI
FEKIYGPLQQDKPDKNKTKETFNDNLEHSTISNDSESSFDTSLENMQTKDVQNLRLSESR
VSKPFCRSVRVEIHEPEDINTVDNRQCSDAKNADVIDKSLSSGSDLDTLENVLHREQNCN
TLCKKNTSENINSLDKDLDFSNSVGKHVSPELEVINSHHQDDNKENDASETQNSNMTFDI
LDDDFNEILKTQSSTLSLDETQNTELNDTDLLLGDISLIGELAKGDNSLKDGGVSAVQDN
SSNIKTEGVETRMLDWSKGVSETTGNGELIQPVRLLTANDCHGNKKRQLSLNEDSMLVTP
PAKKKISYMADQPSLYEVVGNSPLAGKDRLGYLTFAKEVRPQLVEKHPSASFDKISTMVR
SKWAELSEEERQTYETQGNSQMAELKKRVAAGKKLANKMDRRIQPVKGMPSIKDQLLSSH
KKPEEPIKSVSVPFSLHHLRGRYKSGLRLTQPHSTANKRRKLIGPLKYYHGWVCIHGNLI
QLVNPHRFEETVLHRELMENHIIPVSKLENPMGLTESSVGGEQLFQTLVKMIPPQTSHTY
SYIDDIRLKANGFEVRCHQDGESRPVLELVSMATCMPTYGVPDLKEVLDLITNTGASSLY
QARPLKVIYYLQGEAVRMVRQRPVHRTRDEVEETLDQMSSLLPSDCSTCLHNKPLFHTVY
DLETVQSTQLTQSQT
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgagagacaggcagctcgctggttccttgtgttctgtgtcagatctgaccatcacatcc
aaaaataggtcagaggaagttggacacaccttcagctttgatcaccatggaaacattaca
tcacaacaaccctcgcatattgctcaaggcactgttatggttgcctgcaacctgttcaag
catttgcctgtaagaagacagatatacaatgcagtgaagaagaaaaaagaagagcttaag
aaaatagaggaacttttatacgcatatggcatcatacacccaggtgcaagaatcatactt
cgacataacaaggaaattgtgtggcaaaaaacgggggtgccagatacaagagccgctctc
agtctagtattagggaggagtgtagtgcagctaatggaacagcattctgtgcaggataaa
gatacaaatatatgtgttgagtgcttcctccccctttcggactctgatgtcatggcaacc
agtagagcaaccaatgacaggagttttcttgctgtaaacaatcggcctgtggttcttaaa
gaattggagaaggtattgaagcagtattacaatcatgaaaggtctagcgagagtcgtcat
cctgtgtacttccttcatcttaaactatcaaccagtgatttggacatcaatgtggaccct
aacaaaaccagagtgtttctacactgccaggccgaagttctgaaacttctgacaggaatt
tttgaaaaaatctatggaccactgcaacaagacaaaccagacaaaaacaaaaccaaagag
acattcaatgacaaccttgaacattctacaatatcaaatgactctgagtcaagttttgac
acaagtttggaaaatatgcaaacaaaagatgttcaaaatttaagacttagtgaaagcaga
gtttcaaaacctttctgtagaagtgttcgtgttgagatacatgaaccggaagacattaac
actgttgataacagacagtgtagtgatgcaaaaaatgctgatgttatcgacaaatctctt
agttctggctcagacttggatacgttagaaaatgttcttcacagggaacaaaactgtaat
accttgtgtaagaaaaatacgagtgaaaatattaactctttagataaggatttagatttt
tccaattctgttgggaaacatgttagtcctgaacttgaagttataaatagccatcatcaa
gatgacaataaagaaaacgatgccagtgaaacacaaaatagtaacatgacatttgatata
cttgatgatgactttaatgagatccttaaaacacaaagtagtacattgtcattggatgaa
acgcaaaataccgaactgaatgacacagatctactgcttggggacatttctctgattgga
gagcttgcaaagggagataattctttaaaggatggaggtgtttctgcagtacaggacaac
tccagtaatatcaaaaccgagggtgttgaaacaaggatgcttgactggagtaaaggggta
tcagagacaacaggcaatggggaattgatacaacctgtgcgattgttgacagcaaatgac
tgtcatggaaacaagaaaaggcaactctcacttaatgaggacagcatgctagttactccc
cctgctaagaagaaaatcagttacatggcagatcagccaagtctttatgaagttgtaggg
aacagccctttagcgggaaaggatcgactcggctacctcacatttgctaaggaagttaga
cctcaattggtagaaaagcacccatcagcaagcttcgataaaatctcaacaatggtccgt
tcaaagtgggcagagttgtcggaagaagaaagacagacatacgagacacaggggaactcc
cagatggcggagttaaagaagcgagtcgctgcagggaagaaattggccaataagatggac
aggaggatacaaccggtcaaggggatgccctctattaaggaccagcttctctccagccac
aagaagccagaggaaccaatcaaatctgtatctgtcccattttcgttgcaccatctccga
ggcaggtacaagtctggactgcgtcttactcagccacatagtacagcaaacaagagaagg
aagttgattggtcctttgaagtattaccatggttgggtgtgtatccatggcaacctcatt
cagctagtgaatccacatcgttttgaagagacagttttacaccgtgaattgatggaaaac
cacatcataccagtgtcaaagcttgagaatcctatgggtcttactgaaagctctgtgggt
ggtgaacagctgtttcagactctggtcaagatgattcctccccaaacttcacatacatac
tcatacattgacgacatcaggctaaaagcaaatggctttgaggtgagatgtcaccaagat
ggcgagagcagacctgtccttgagcttgtttccatggcgacctgcatgcccacctacggg
gtaccagaccttaaagaagtgttagaccttataacaaacactggagctagcagcttgtac
caggcgcgacctctcaaggtcatatactatcttcagggagaagcagtccggatggtaagg
caacgtccagttcatcgtacaagagatgaagtagaagaaactttagaccagatgtcatct
ttgctgcccagcgactgtagcacctgcttacataacaagcctcttttccatactgtatat
gaccttgaaactgtacagtctactcaattgacacagtctcaaacttga
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