Mya arenaria (softshell): 128233003
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Entry
128233003 CDS
T09995
Name
(RefSeq) general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
maea
Mya arenaria (softshell)
Pathway
maea03022
Basal transcription factors
maea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128233003
09124 Replication and repair
03420 Nucleotide excision repair
128233003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128233003
03400 DNA repair and recombination proteins [BR:
maea03400
]
128233003
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
128233003
DNA repair and recombination proteins [BR:
maea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
128233003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Vir_act_alpha_C
Motif
Other DBs
NCBI-GeneID:
128233003
NCBI-ProteinID:
XP_052802807
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All DBs
Position
4:60720603..60731740
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AA seq
556 aa
AA seq
DB search
MSRQSEEVLLIVNHVKNKKVDGVLYMMGERLAWMQASKQSFTYSHAYADIKAQKISPDTK
EKVQLQLVMHDGGANTFQLNNPKGRAAQVADRDSVKELLQQLLPKFRRKLSNELEEKNRL
LQENPELFQLYKDLVVSQVITAEEFWATQAPKYSAKEKVEQNQTTGVSAAFLADIKPETD
GCNGLKYNLTADIIESIFRTYPMVKKKHAEYVPHEMSESEFWTRFFQSHYFHRDRIAHTS
KDLFSDCAKKDEDEIKMEVQKRNTDPLLDISSLKDGNIGDGYGGGIGEDRGGSASSANMT
MIRRFNHHSTMVLKACEQAGSQATTASSQNGAARPANGSLAATQMNGETSHSHENTPKKA
RIREKLQFNDLEVTECRKTVNMRLSRMERYLHGPTPITSSRYTSSEDLISANNTVSAEID
SWNPNLTHVLLGSSAVTVLGELSPGGALMHGSTQQQLNQMVPDDVQQELKQSYSALCELL
RHFWACFPASNKLLEEKVVKMKSTLERFHMNKLNPLKDKLLQSHYSMDLTAHMQDLLNAA
YTKFETWQSRRMLRKS
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtcagtcggaggaggtgctgctgattgtgaaccatgttaaaaacaagaaggtt
gatggcgtgctctatatgatgggagagagactggcctggatgcaggccagcaaacaaagc
ttcacgtatagccatgcttatgctgatatcaaagcacagaagatatccccggacacaaag
gagaaggttcagctgcagctggtgatgcatgatggcggggcgaatacttttcagcttaac
aacccgaagggccgggcagcccaggttgcagacagggacagcgtaaaggaactcctgcaa
cagctcctccccaaattcaggcgcaaactaagcaatgaacttgaagaaaagaatagactg
ttacaggagaacccagagttgttccagctgtacaaggacctggtggtttcccaggtgatc
actgccgaggagttctgggccacacaggcacctaaatacagtgcgaaagagaaagtggaa
cagaaccaaacaactggagtatcagctgcatttttagctgacattaaaccagagacagat
ggctgtaatgggctcaagtataacctcacggctgacatcatagagtccatcttcagaact
tatccaatggtaaaaaagaagcatgcagagtacgtcccacatgagatgtcggagagtgag
ttctggacaaggttcttccagtcacactatttccacagagaccgcattgcacataccagc
aaggacctcttctcagactgcgccaagaaagatgaggacgaaatcaaaatggaggttcaa
aagagaaatacagacccgttgctggatatttcttccctcaaagatggaaatataggagat
ggttatggaggtgggataggcgaagacaggggaggctctgccagctcagccaacatgacg
atgatacgccgtttcaaccaccattccactatggtcctcaaggcctgtgaacaggccggc
agccaggctacaactgcatcaagccagaatggagcagcaaggcctgccaatgggagtctt
gcagccacacaaatgaatggagagacaagtcactctcatgaaaacacaccaaaaaaggcc
cgaattcgagaaaaacttcagtttaatgacctagaagtgacagaatgtcgtaagactgtg
aatatgcggttgtcacgcatggagcgctacctccacgggcctacgcctatcacatcatcc
cgatatacttccagtgaggatctcatctcagcaaacaacactgtatctgcggaaattgac
tcatggaatccaaacctcactcatgttctgctgggctcatcagcagttacggttcttggg
gagttgtcaccagggggtgcgctcatgcacggatccacacagcaacagctcaaccagatg
gtcccggatgatgtacagcaggaattaaagcagtcctactcagccctctgtgaactgctc
cggcacttctgggcctgcttccctgcatcaaacaaacttcttgaagaaaaggttgtaaaa
atgaagtccacattagagagattccacatgaacaaattaaacccgctaaaggacaaatta
ctccagagtcactattccatggatctgacagcacatatgcaagacctcctgaatgcggca
tacacaaagtttgaaacttggcagtctagacgcatgctacggaaatcctga
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