Mya arenaria (softshell): 128233481
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Entry
128233481 CDS
T09995
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128233481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
maea03041
]
128233481
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128233481
Spliceosome [BR:
maea03041
]
Complex C
Other components
Step II factors
128233481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
RSRP
AAA_22
GIPC1_GH2
AAA_19
ABC_tran
Sigma54_activ_2
nSTAND3
AAA_30
AAA_16
OB_RRP5_4th
TsaE
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
128233481
NCBI-ProteinID:
XP_052803131
LinkDB
All DBs
Position
1:complement(19501410..19531372)
Genome browser
AA seq
1207 aa
AA seq
DB search
MDELQKLEHLSLVSKVCTELDNHLGMNDKDLAEFIIDLAEKNNTFEAFKKALLENGAEFG
ESLIANLLRLIQKMKPKPQKKVTAEVKSAQQLSELEMKKKLFPGLALPNEVREKSPELPE
DKEKDKNIADSMMGELEALMSTAKSIGSEKEKTSRDNRSRSRSPRKKKKRRSRSRSRSRS
RDRRRSRSRDRKKKKRRDRSYSRSRSRSRSRDRDRNREEKYRDRDGKRDRRGGDRGHDRG
HEMPVEVEVGKIYAGRVMTIMQFGCFVAVEGVRKKSEGLVHVSQLRSEGRVSNVSDVVQK
GQKVKVKVLSYTGNKMSLSIKDVDQNTGRDLNPKQTAAITGGEKDIVNEARNPDRPSAVP
LVTVPEQNEGTERKRVQRMSSPEKWEWQQMAAANVIDITELPDFDEETGVLPRDDDSDED
IEIEIVEEQAPFLAGHGKESLDLSPIKIVKNPDGSLSQAAMMQSALSKERREIKQQQREA
EMNSVPNTSNNEWQDPMADGDKRYGSRGVGSQPADLPEWKKSIMGGQKASYGKKEKKSIL
EQRQSLPIFKLKDELTKAVHDNQVLVVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPR
RVAAMSVAKRVSEEYGCRLGQEVGYTMRFEDCTSPETKIKYMTEGMLLRECLVDRDMMQY
SIIMLDEAHERTVHTDVLFGLLKDAVKKRKDLKLIVTSATLDAVKFSQYFFESPIFTIPG
RTYPVEILYTKEAETDYLDASLITVMQIHLMEPPGDILLFLTGQEEIDTACEILYERMKA
LGPEVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGF
VKQKVYNSKTGMDQLIVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLPTAVPE
IQRTNLASTVLSLKAMGINDLLTFDFMDAPPMQTLVSAMEQLHALSALDDEGLLTRLGRR
MAEFPLEPMLSKMLIMSVHVGCSDDILTIVSMLSVQNVFYRPKDKQDLADQRKAKFHQIE
GDHVTLLAVYNAWKNNKFSSPWCFENFVQVRTLKRAQDVRKQMLGIMDRHKLDVVSAGKA
TSKVQKAICSGFFRNAAKKDPQEGYRTLVDGQVVYIHPSSALFNRQPEWVIYHELVLTTK
EYMREVTAMDPKWLVEFAPKFFRFSDPTRLSKQKKQQKIEPLYNKYDDPNSWRISRAFRK
FHTKVTF
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggatgaactacagaaattggagcacctctcgttggtgtccaaagtctgcactgagctc
gataaccatctcggcatgaacgacaaagatcttgctgaattcatcattgatctagcagaa
aagaacaacacttttgaagccttcaagaaagcactgcttgaaaatggtgcagaatttggg
gaatctctgatagccaatcttttaagattgatacagaagatgaagcccaagcctcagaag
aaggtcacggctgaggtgaagtctgctcagcagctctcggaactcgagatgaagaaaaaa
ctcttcccgggtcttgcgctgccgaatgaagttagagagaaatcaccagagttacctgag
gacaaagaaaaagataagaacatcgcggacagcatgatgggggagttagaagctctgatg
agcacagccaaatcaattggatcagagaaagagaaaacatcccgcgacaacagaagtaga
agcaggtccccacgcaaaaagaaaaagaggcggtcccgcagtagaagcagaagtagatct
cgagatcggcgaaggtcgaggtcacgtgatcgcaaaaagaaaaagcgccgtgatcggtcg
tatagtcgtagccggagtagaagtcgtagtagagacagagacagaaacagagaagagaaa
tatcgtgacagggatgggaagcgggatagaagaggcggtgatcgtggtcacgaccgaggt
cacgagatgccggtggaggtcgaagtgggaaagatatatgctggccgcgtgatgaccatc
atgcagtttgggtgttttgtggccgtcgagggcgtgagaaagaagagtgagggactagtt
catgtctctcagcttcgcagtgaaggaagggtatctaacgtctctgatgtcgtacagaaa
ggtcaaaaggtcaaggtcaaggtgctgtcctacacaggcaacaaaatgagcctctctata
aaggatgttgaccaaaacacgggcagggatctcaaccccaaacagactgcagcaatcacg
ggcggagaaaaggacatcgtgaacgaagcccgtaatcctgaccgcccatctgccgtaccg
cttgtcacggtgcccgaacaaaatgagggaacagaaaggaaacgggtgcagcgaatgtca
tcgcccgaaaaatgggagtggcaacagatggcagctgcgaatgtgatcgacattacagag
ttaccggactttgatgaagagacaggagttttgccgagggatgatgattcagatgaagat
attgaaatagaaatagtggaagagcaggcacccttcctggctggacatgggaaggagtcg
ctagatcttagtcccatcaagattgttaagaatcctgatggatcactgtctcaagcagct
atgatgcagtctgccctgtcgaaagaaaggagggagattaaacaacaacagagggaagct
gagatgaactctgtgcccaacacttccaataatgaatggcaggaccctatggcggacggt
gataagaggtatggatcccgtggagttggatcccagcctgcagatctaccagagtggaag
aaaagcattatgggaggacagaaggcatcatacggaaagaaggagaaaaagtcgatcctt
gaacagaggcagagtctacctatatttaagctcaaagatgaactgaccaaggctgtccat
gacaaccaagtgttagttgtaattggagaaactggttcagggaagacaactcaaatcacg
caatatctcgcagaggctggttacacaacacgtgggaaaattggttgtacgcaacctcgt
cgtgtggcggccatgtcggtggcaaaacgtgtgtcagaagaatatggttgtagacttggt
caggaggttggttacacaatgcgtttcgaggattgtacaagcccagagacaaagattaag
tacatgacggagggtatgttactgcgtgagtgtctcgtggaccgggatatgatgcagtat
tccattatcatgttggacgaggctcacgaacggacggtgcatacggacgttctgtttggg
ctgcttaaagatgcagtgaagaagagaaaggatctaaagcttatcgtcacctctgcgacg
ctggatgccgtcaaattctcacagtacttcttcgaatcgccaatcttcacaattcctggc
cggacatatccagtggaaattctctacaccaaggaagcagagacagactacttggatgca
tcgcttatcactgttatgcagattcacctgatggaaccgccaggggacatcctactgttt
ttaactggtcaagaagagatcgatacagcctgcgagattctttatgagaggatgaaggcg
ctcggtccagaggttcctgagcttataattctgccagtgtacagtgccctgcctagtgaa
atgcagacaaggatttttgatccagccccacctggctctagaaaggtggtgatagccacc
aacatagctgagacgtccctcacgatagatggtatctactacgtggtggatccaggcttt
gtgaaacagaaggtttacaactctaaaacggggatggatcagctgattgtgactccaatc
tcacaggctcaagctaagcagcgtgcaggccgcgccggtagaactgggccaggaaaatgt
taccgcctctatacagagagggcgtacagagatgaaatgttgcccactgcagttccagaa
atacagagaaccaacttggccagtactgtgctctcactcaaagctatgggcatcaatgac
ctgctgacgtttgactttatggacgcccctcccatgcaaacgcttgtgtcggccatggaa
caactgcacgctctcagtgcactagatgacgaagggcttcttacaagactgggcagaagg
atggcagaattccccctagagccgatgttgtccaagatgttgattatgtctgtgcatgtg
ggctgttcagacgacattcttaccatcgtttccatgttgtcagtacaaaatgtcttctac
agaccaaaggacaaacaagatttggcagaccagcgtaaggccaagtttcaccagattgag
ggtgaccatgtcactctgttggccgtgtacaacgcctggaaaaacaataagttctctagt
ccatggtgcttcgaaaactttgtgcaagtacgtacgctgaaacgagcgcaggacgtgagg
aaacagatgctcggaattatggaccgacacaagttagatgtcgtgtcagcagggaaggcc
acctccaaggtacaaaaggcaatctgcagtgggtttttccgaaatgcggccaagaaagat
ccccaggaaggctataggactttggtcgatggacaagtggtgtacattcatccatcaagt
gcattgtttaataggcaaccagagtgggtgatttaccatgaacttgtgctaaccacaaaa
gagtacatgcgagaagtgaccgccatggatcccaagtggctggtggaatttgcgcccaaa
ttcttccgattctccgacccaacaaggctcagcaaacagaagaaacaacagaagattgaa
cctctttataacaaatatgatgatccgaactcttggagaatttctcgtgctttcaggaag
ttccatacgaaagttactttttga
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