Mya arenaria (softshell): 128234000
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Entry
128234000 CDS
T09995
Name
(RefSeq) ATP-dependent RNA helicase me31b-like isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128234000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128234000
03036 Chromosome and associated proteins [BR:
maea03036
]
128234000
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128234000
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
128234000
mRNA degradation factors
5'-3' decay
Decapping complex
128234000
Chromosome and associated proteins [BR:
maea03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128234000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
128234000
NCBI-ProteinID:
XP_052803878
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All DBs
Position
5:21144317..21161816
Genome browser
AA seq
447 aa
AA seq
DB search
MAAATKMENPINHSSPATGDMKAENDQGWKAKLKMPPKDQRFKTSDVTNTKGNEFEDFCL
KRDLLMGIFEKGWESPSPIQEASIPIALTGRDILARAKNGTGKTGAYAIPILERVDNTRD
EVQAMCVVPTRELALQTSQILIELSKHIGAKVMVTTGGTNLKDDIMRLYEPVHVVVATPG
RILDLMNKNLVKISKCGILVLDEADKLLSQDFKGMLDNIISHLPNDRQILLYSATFPLSV
EQFMKKYLHSPYEINLMDELTLKGVTQYYAFVQEKQKVHCLNTLFSKLQINQSIIFCNST
QRVELLAKKITELGYSCFYIHARMNQQHRNRVFHDFRQGLCRNLVCSDLFTRGIDIQAVN
VVINFDFPKHAETYLHRIGRSGRYGHLGIAINLITYDDRFSLHKIESELGTEIKPIPKNI
DKALYVAEYHTEPDEDDLPEKTNGAKG
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgccaccaagatggagaaccctatcaaccattctagtccagcaactggcgat
atgaaggcagaaaatgaccagggttggaaagcgaaattaaaaatgccaccaaaggatcaa
agattcaaaacatccgatgtaacaaacactaaaggcaacgagttcgaagatttttgcctg
aaacgcgacctgcttatgggcatttttgagaagggctgggaatcaccttccccaatccaa
gaggctagcatcccgatagcactgacgggccgtgatattcttgcacgcgcaaagaatggc
acaggcaagacaggagcgtatgccattccaatcttggagagggtggataatacaagagat
gaggtgcaagccatgtgtgtagtcccgacacgagagttagcattgcagactagtcagatc
ctgatcgagctgtccaaacacatcggggccaaggtgatggtcaccacaggaggaaccaat
cttaaagatgacattatgaggctttatgaaccagtacatgttgtagtagccacgcccggg
agaatcctggatttaatgaataaaaacctggtgaaaatcagcaagtgtgggatcctggtt
ttagatgaggctgacaagttattatcccaggatttcaagggaatgttggacaacatcatc
agtcacttacccaacgaccgacagatccttctctactcagccacatttcctctctccgtc
gaacaattcatgaagaagtacttgcacagtccatacgagataaacttgatggacgagttg
acgttgaagggagtcacacagtactacgcctttgtccaagagaaacagaaagtccactgc
ttgaacaccctcttctctaagctccaaataaaccagtctatcatattctgcaactcaacc
caacgtgtggaactgctggccaagaagattacggagctgggctactcatgtttttacatt
catgcccgaatgaaccagcagcacagaaatcgggtgtttcatgacttcaggcagggactc
tgcagaaatcttgtctgctcagatctgttcacaagaggtattgacattcaggcggtaaat
gtagtgatcaactttgacttcccgaagcacgcggagacgtacctccacaggatcggcagg
tctggcagatacggccacctcggtatagccatcaatctcatcacatatgatgacaggttt
tcactgcacaaaattgagagtgaacttgggacagaaatcaagcccattccgaagaacatc
gacaaggcgctgtacgttgccgagtaccacacggaacctgatgaagatgacctccccgag
aaaaccaacggagcgaagggctag
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