Mya arenaria (softshell): 128235304
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Entry
128235304 CDS
T09995
Name
(RefSeq) ATP-dependent RNA helicase me31b-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128235304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128235304
03036 Chromosome and associated proteins [BR:
maea03036
]
128235304
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128235304
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
128235304
mRNA degradation factors
5'-3' decay
Decapping complex
128235304
Chromosome and associated proteins [BR:
maea03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128235304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
128235304
NCBI-ProteinID:
XP_052806078
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All DBs
Position
5:21018288..21028240
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AA seq
350 aa
AA seq
DB search
MAAATKMENPINHSSPATGDMKAENDQGWKAKLKMPPKDQRFKTSDVTNTKGNEFEDFCL
KRDLLMGIFEKGWESPSPIQEASIPIALTGRDILARAKNGTGKTGAYAIPILERVDNTRD
EVQAMCVVPTRELALQTSQILIELSKHIGAKVMVTTGGTNLKDDIMRLYEPVHVVVATPG
RILDLMNKNLVKISKCGILVLDEADKLLSQDFKGMLDNIISHLPNDRQILLYSATFPLSV
EQFMKKYLHSPYEINLMDELTLKGVTQYYAFVQEKQKVHCLNTLFSKLQINQSIIFCNST
QRVELLAKKITELGYSCFYIHARMNQQHRNRVFHDFRQGLCRNLVCSGLY
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgccaccaagatggagaaccctatcaaccattctagtccagcaactggcgat
atgaaggcagaaaatgaccagggttggaaagcgaaattaaaaatgccaccaaaggatcaa
agattcaaaacatccgatgtaacaaacactaaaggcaacgagttcgaagatttttgcctg
aaacgcgacctgcttatgggcatttttgagaagggctgggaatcaccttccccaatccaa
gaggctagcatcccgatagcactgacgggccgtgatattcttgcacgcgcaaagaatggc
acaggcaagacaggagcgtatgccattccaatcttggagagggtggataatacaagagat
gaggtgcaagccatgtgtgtagtcccgacacgagagttagcattgcagactagtcagatc
ctgatcgagctgtccaaacacatcggggccaaggtgatggtcaccacaggaggaaccaat
cttaaagatgacattatgaggctttatgaaccagtacatgttgtagtagccacgcccggg
agaatcctggatttaatgaataaaaacctggtgaaaatcagcaagtgtgggatcctggtt
ttagatgaggctgacaagttattatcccaggatttcaagggaatgttggacaacatcatc
agtcacttacccaacgaccgacagatccttctctactcagccacatttcctctctccgtc
gaacaattcatgaagaagtacctgcacagtccatacgagataaacttgatggacgagttg
acgttgaagggagtcacacagtactacgcctttgtccaagagaaacagaaagtccactgc
ttgaacaccctcttctctaagctccaaatcaaccagtctatcatattctgcaactcaacc
caacgtgtggaactgctggccaagaagattacggagctgggctactcatgtttttacatt
catgcccgaatgaaccagcagcacagaaatcgggtgtttcatgacttcaggcagggactc
tgcagaaatcttgtctgctcaggtctgtattaa
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