Mya arenaria (softshell): 128238657
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Entry
128238657 CDS
T09995
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
maea
Mya arenaria (softshell)
Pathway
maea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128238657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128238657
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128238657
mRNA degradation factors
5'-3' decay
Decapping complex
128238657
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
128238657
NCBI-ProteinID:
XP_052810745
LinkDB
All DBs
Position
6:complement(79534883..79554844)
Genome browser
AA seq
849 aa
AA seq
DB search
MADACLDDYSALGSRVSSYDNQLLEAPEEEEDFDVLNEETFGDIGNAEFDWEEQTEKFAE
VLESDRHNDSGFNTAEKVYRSHEEYMEQSISQLMVDDDDPDPAIVRSKPIPQRQQTLDSL
FGPASPPSFLDAEQLMSPTSKNIWGSPLQESPYHPPSHVNNIQAMFDLAKSSNTVRSRVQ
SLQYSVDCPVAHIHGPHSKAPPMQLPKAQTLEEIENSLMRKPRILTAEELERQLRGESSA
PPVRQPVSQTFSSVLQNGHRVSAAQYNVPPPALQGSPHSRMAPVSSMQGMVNGHRSPVFG
GPPGLVGSAPSTPGRPPPPRGMPIPPVGSVAPGSPAMPVGTPPYRSGASPLNRQSPGTPG
PGLSQPIGIPRGMRGLPPSGSPFSSPQAMVGSPQGPIQSPQQLLHRMPPPGSYGDNSRNN
GNMMYQSSPHMQGPYNREHRQLGRSDHQQQHREHRYYRYPYNQKHESHGDHAPLSAGKRG
SKDQDDYDGLMAQKEKDWIIKIQLLQLQTDNPLEDDYYYTSWCMRKKAREQEKEGGASNS
KLVIPSMARMEHRAYKPAQFEGSLGRLTTSSVHNPRQIIDLLAKSMSDKGGAKTKSTVGK
ELRKSRQLLMDIEKGYNILLIIEDLETKILALPEDTAKPLLEERSCYVDLLFHYLLCDGN
SASFMQYMNVRKGRSLTRRALPCLDKVQSVGIVSLVCKNLQQLMKKDQTDEHLEELFVPC
ASVIEGCNLATVVMFAEDIQQEDTPSTTKPIALALQNKFGSSILCALLHRGEKIYSTLSP
VDLDSNLQNEWCEFVHEFAGILATLPLECIAAPLETYPDISEHLERLLNKRLLAVVEDNL
DIFTQTRQS
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgcgtgtttggacgattattctgctctaggttcgagagtgtcaagttatgac
aaccaattgctagaggctccagaggaagaagaagattttgatgtcctcaatgaggagaca
ttcggggatattggcaatgcggagtttgactgggaagagcagacagagaagtttgcggag
gtgctggagtcagaccgccacaatgactcaggcttcaacactgctgagaaagtgtaccgc
tcacatgaggagtatatggagcagagtatcagtcagctgatggtagatgatgatgaccct
gaccccgccattgtcaggtccaaacctataccacagcggcagcagacccttgacagcctg
tttggtccagcgtctccccccagcttcctggacgcggaacagctcatgtcacccaccagc
aagaacatctggggctccccactccaggagtccccctaccatccgccctcacacgtcaac
aacatacaggccatgttcgacctcgccaagagttccaacactgtacgttcacgtgtgcaa
tccctacaatattcagtggattgcccagtcgcccacattcacggtccccattccaaggcc
ccgccaatgcagcttcctaaagcccagacccttgaggagatcgagaactccctgatgcgt
aaaccccgcatcctcaccgctgaggagcttgagagacagctacgaggggagtcaagtgcc
ccacccgtccgccagccagtctcacagactttctcatcagtgttgcagaatggacatcga
gtgtcggcagctcaatacaacgtgcctcctccagccctccaaggatctccccatagtaga
atggctccagtaagctccatgcagggaatggtaaacggtcatcggtccccagtgtttggt
ggccccccgggcctggtaggcagtgctccctccacccctggccgtcctcccccacccagg
ggcatgcccatcccgccagtgggatctgtagctccgggatcccccgccatgcctgtggga
actccgccatatagaagtggtgcttctcctcttaacagacagtcaccaggcactccaggt
ccagggttgtcccagcccattggtattccacggggaatgaggggtctgcccccctcaggg
agccccttttctagcccccaggcaatggtgggcagtcctcagggtcccatacaaagtcct
caacagctactacacaggatgcctccccctggtagctatggtgacaatagcaggaacaat
ggcaacatgatgtaccagtcatctcctcacatgcaaggtccgtacaaccgtgaacatcgt
cagcttggtcgcagtgaccaccagcagcagcacagggagcaccgctactaccgctacccg
tacaaccagaagcacgagtctcacggcgaccatgcccccctatcagcaggaaaacgtggc
agtaaggaccaggatgattatgatgggctcatggcccagaaggaaaaagactggatcatc
aagatacagctgcttcagcttcagactgacaatccactggaggatgactactactacact
tcctggtgtatgcgtaagaaggctcgtgaacaggagaaggaaggaggtgccagcaactca
aaacttgtcatcccctccatggcacgcatggaacacagggcttacaaacctgcccagttt
gaaggatcccttggtcggctaacaacatcaagtgttcataatccccgccagatcattgac
ctgttggccaagagcatgtcagacaaaggaggagccaagaccaagtccacagtcggaaaa
gagctgaggaagtcgagacaactccttatggacattgaaaagggatacaacattctcctg
atcattgaggatttggaaaccaagattctagcacttcctgaagatacagcaaagccccta
ctggaggagcgctcctgctacgtggaccttttgttccactacctgctgtgtgacggcaac
tctgcgtccttcatgcagtacatgaacgtcaggaagggccgatctctcactcgtagggct
ctaccatgcttggataaggtgcagtctgtgggcattgtgtctctggtatgcaagaatctg
cagcagctcatgaagaaagaccagacagatgagcacctagaggagctgtttgttccctgt
gcgagtgtgatcgaaggatgtaacctggccacagtggtcatgtttgcagaggacatacag
caggaagacacgccctccacaaccaaacctattgcccttgcactgcagaacaagtttggc
agttcaatcctgtgtgccctgctacaccgaggagagaagatctacagtacactttcacct
gtggaccttgatagcaacctacagaacgaatggtgtgagtttgtccatgagtttgctggc
attctggccacattgcccctagagtgtatcgccgccccgctcgagacttaccccgacatc
tctgaacatcttgagcggctccttaacaaacgcctgctggccgtggtagaagataacctt
gacatctttacccagactaggcagtcctga
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