Mya arenaria (softshell): 128238940
Help
Entry
128238940 CDS
T09995
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1-like isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128238940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128238940
Enzymes [BR:
maea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128238940
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
128238940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
128238940
NCBI-ProteinID:
XP_052811234
LinkDB
All DBs
Position
6:complement(33758835..33795186)
Genome browser
AA seq
1720 aa
AA seq
DB search
MDKRDDFNPYYGIEEVQFRFYTTKDVRALSVKEITNVETFDTLNHPTVGGLYDQALGPSD
EHDVCFTCNQPSLHCPGHMGHMELAMPVFNPLLFMTMLQTLRATCFTCHRLNVDPIACTL
FLAESQLLEAGLVAEAAMLSYRFSEEDRSEDRSQHKQLIEETAKQCLQGKAREQDKNSHS
YKNVEAVRQSISSIFTKVQMRKNKKCAHCLAKRKTLRHEDRSKIFLVGTLADAPKETGKT
KVTNNQTGDDPEDDGDDEEEGDNSDTEEPARKRSRPDVIKSKQKGSSVSNISMITPLKLR
DHFRKVWSADGVVLQEVYPVLKHSGLEFPTDIFFLEAIPVPPTKFRPISEMHDQKYEHSQ
TSNLLAILKDNSLVRDILWEMEKSSADTQVGPGSFSRELNIIPGKTLYEKLSAALARLQM
MINRFHDSEADKSLTQDSKKNIGIKQVLEKKSGLFRKHMMGKRVNFAARSVISPDPNINT
NEIGIPLVFAKVLTYPQPVTPWNVHELRQAVINGPSIYPGATHIVEENGRVTLLKGNQPI
QRQALANSLLTPSQVDVSKPINGTKKVLRHLKNGDVLLLNRQPTLHRPSIQAHKARVLSG
EKTLRLHYANCKAYNADFDGDEMNAHFPQNEIARAEAYNIVSTDFQYLVPKDGTPLAGLI
QDHMVSGVTLTIRGRFFSRSDYCRLVYGALVDCPGRLKLLPPAILKPHPLWSGKQVLSTV
VLNIIPADKPALSLIGKAKIPEKVWVKAGVNMPAISQYGMGESDVVIRQGELLIGVLDKG
HYGPTPFGLVHCSYELYGGGVAGQMLTCFGRLFMNFLQQRGFTLGVEDILVTRKADKARA
KIVRNSPKVGGAVARKTLDMEMGTGDREVADALMSAHFTPNQQRMRELDMNMRNQTNDIQ
NSIVNTCMPNGLLKLFPENNLQLMVVSGAKGSSVNCMQISCLLGQIELEGKRPPLMLSGK
TLPSFLAYDVTPRAGGFVTGRFLTGIRQQEYFFHCMAGREGLIDTAVKTSRSGYLQRCLI
KHLEGIKVGYDLTVRDSDNSVIQFNYGEDGLDLHKTGFLKPRQLPFLVENQGVISSVQPR
CSQDDEAPGKISYLEKKIQKWRKKHGQGEGKKVRTSGFLSFCQLVEPSGEKALKGVPGRK
LRDSQLCKMWKGLSNKEREKYGRYQGRCPDPVMSQFSQYLPRVLPEKLDAEIRSFSKQQL
SGLGMSESKFWEMMSLKVQRAVVEPGEPVGLLSAQSIGEPSTQMTLNTFHFAGRNEMNVT
LGIPRLREVLMVGSRQIKTPAIDVPVVPGGPAKDRARELQKHLTKVHLKELLQDVEVVEW
LAIEGRMKHQRRRMFKVTFHFLPWSCYRDKFAVKPDQVIRFLEKVYVKKLLQHIRFTINK
QAKRRLMSSGSTKRVVERAPAEDEEPMAEPETEEGQEVLDADDGDDTATGQKRKKDEEQE
YEDGEEDGAETGGNTEVQDTEDVVMDEDEEVPSDMEDIDEALIAEYEEKDTDSDSVNHRI
NTVLQLAGEVAGYKFDTKKKQWAELTLSFPLVDSKLDLLALVESHVQRVVVHEVVGISRC
ILGEEKGPHGGMEFHLKTEGINMMEMYKHADFIDVNRLYCNSIHHVADTYGIEAANKAII
KEIEAVFAAYGIQVDHRHLSLVADYMTFEGVYKPFNRRALETNPSPLQKMSFESTMGFIL
SSVINKNVDKLLSPSSQIVVGKNVTTGTGCFELFTPMVVS
NT seq
5163 nt
NT seq
+upstream
nt +downstream
nt
atggacaagagagatgactttaacccatattatgggatagaagaagttcagttccgattt
tacacaacaaaggatgtcagggcattgagtgtgaaggaaataacaaatgtggagaccttt
gacaccctcaaccatccaacagttgggggactgtatgatcaggcactgggcccatcggat
gagcatgatgtctgttttacctgtaaccagccatccttgcattgcccaggccatatgggc
cacatggagctggccatgccagtcttcaaccctcttctctttatgaccatgctacagaca
ctacgggccacatgtttcacctgtcacagactgaacgtcgacccgattgcctgcacactg
ttcctggccgagagccaacttctcgaggcggggcttgttgccgaggccgccatgttgtca
tatagattcagcgaggaggatcgcagtgaagatcgtagccagcataaacagctaattgag
gaaactgctaaacaatgcctgcaaggaaaggcacgagaacaggacaaaaacagtcacagt
tacaagaatgtcgaggccgtcagacagagcatttccagcatcttcaccaaagttcagatg
cgcaaaaacaagaagtgtgctcactgcctcgccaagagaaaaacactgagacatgaggat
cgctccaaaattttcctggttggaacccttgctgatgctcctaaggaaacgggaaaaaca
aaggtcacaaacaaccagactggtgatgatcctgaagatgatggcgatgacgaggaagag
ggggataactcggacaccgaagagcccgccaggaaaaggagtagaccagatgtgataaaa
tctaaacagaagggaagcagcgtgtcgaacataagtatgatcactccattgaagttacgg
gaccatttccgcaaggtgtggtcagctgatggagtggttctacaggaagtctaccccgta
ctgaaacactcgggcctggagtttccgactgacatcttctttctggaggcaattcctgtg
ccacctacaaagttcagaccaatctcagagatgcatgatcagaagtacgaacactcgcag
acgtcaaacctgctggcgatactgaaagataactccctggtgcgtgacattctctgggag
atggagaaatcctccgcagacacgcaggtcggccccggcagcttttcccgtgaactgaac
attattccggggaagacgctttatgaaaagttgagtgccgctttggctcgactacagatg
atgataaaccggtttcacgacagcgaggctgacaagtcacttactcaggacagcaaaaaa
aatattggcattaaacaggtgcttgagaagaagtctggtttgtttcgcaagcacatgatg
ggtaaacgtgtgaactttgcagcacgttcagttatctcccctgatccaaatatcaacaca
aacgaaattggtattcccctcgtgtttgccaaggtgctcacgtaccctcagcccgtcact
ccctggaatgtccatgaactgagacaggcggtcatcaatgggcccagcatctaccctggt
gcgacccacatcgtcgaggagaatgggcgtgtgaccctactgaaagggaaccagccaatc
cagcgccaggctcttgctaactccctccttacaccaagtcaggttgacgtctccaaaccc
atcaatggaacaaagaaggtgttgagacatttaaagaatggggatgtgttgctgctaaac
agacagcccacacttcacaggcccagtatacaggcacataaggctcgagttttgagtgga
gagaaaacattgcgtcttcactatgccaactgcaaggcatacaatgcagactttgatgga
gatgagatgaacgcccatttccctcaaaacgagatcgccagggcggaagcctacaatatt
gtgagtacagactttcagtaccttgtacccaaggacggtacgccattggccggactcatc
caggatcacatggtgtctggggtcacccttacaatcaggggcaggttcttttcaaggtcg
gactactgtcgattggtgtatggggccttggtggattgtcccgggcgactgaagctcctc
ccacctgccatcttgaagccccatcccctgtggtcgggcaagcaggtgctctcaacagtt
gttctgaacataatacctgccgacaaacctgcactctcactcatcggcaaggccaagata
ccagaaaaggtttgggtgaaggcgggtgttaacatgccagctatcagccagtacgggatg
ggggagagtgatgttgttatacgccagggggagctacttattggggtcctggataaggga
cactatgggcccacaccatttgggcttgtacactgtagttatgagctgtatggtggtgga
gttgcgggccagatgttgacctgttttggtcgtctgtttatgaacttcctccagcagagg
ggcttcacactgggagtggaggatattcttgtcaccaggaaggctgacaaagcgcgagcc
aaaatagtccgcaactctccaaaggtcggtggggctgtggctcggaagaccctggacatg
gagatggggacgggtgacagggaagtggccgatgccctcatgtcagcccatttcacacca
aaccagcaacggatgagagagcttgatatgaatatgcgcaatcagacaaacgacatccag
aactccattgtcaatacctgtatgccaaatggcctgctgaagctgttcccagaaaacaat
ctccagttgatggttgtgtcaggagcaaaaggttcctccgtgaactgcatgcagatctcc
tgcctccttggccagatcgaacttgagggcaagcggccgccgctcatgttgagcgggaaa
accctgccctcgttccttgcgtacgacgtcacaccgcgggcaggaggcttcgtaacaggg
cgttttttgactggaattcgtcaacaagagtacttctttcattgtatggctgggagagag
ggtctgattgacacggcagtgaagacgtctcgtagtggctacctgcagcgttgtctcatc
aaacacttggaaggcatcaaggtcggctatgatctcacggtgcgggacagtgacaacagt
gttatacagtttaactatggggaggatgggttagatcttcacaagactggtttcctgaag
ccccgccagctcccgtttctcgtagaaaaccaaggtgtgatctcaagtgtgcaacctcgc
tgctcacaagatgatgaggcacctggcaagatctcttaccttgagaaaaagatacaaaaa
tggcgcaaaaagcatggccagggggaagggaagaaggtgcgaacatcgggatttctgagt
ttctgtcagctggtagagccttctggagaaaaggccctgaaaggggtacctggccggaaa
ttgcgtgattcacagttgtgtaaaatgtggaagggcctcagtaacaaggagagagaaaag
tacgggcgataccaaggtcggtgccctgatcccgtgatgtcccagttctcccagtacctg
ccccgtgtgctgcccgagaaactagacgcggagataaggagtttctctaaacaacaactg
agcggtcttggcatgtcagaatcaaagttctgggaaatgatgtcattgaaagtacagcgg
gcggtggttgagcctggggaaccagttgggcttctcagtgcccagtctatcggagagcct
tcaacccagatgaccttgaacacgttccacttcgctggtcgtaatgagatgaacgtgaca
ctgggaattccccgtcttcgggaggttctcatggtgggctcccgacagatcaagacaccc
gccatcgacgtgcccgtggtgcctggaggtccagcgaaggaccgagcacgggagctccag
aaacacttgacaaaagtacacttgaaagagctattacaagatgtggaggttgtggaatgg
ttggctattgagggtcgtatgaaacatcaacggcgacgcatgttcaaggtcaccttccac
ttcctgccgtggtcatgttaccgtgacaagtttgctgtgaaaccagaccaggtgatccgc
ttccttgagaaagtatatgtgaagaaactgttacagcacatccgcttcaccatcaacaag
caggcaaagagaaggttgatgtcgagtggaagcacaaagcgtgtggtggagcgtgctccg
gctgaggatgaggaaccaatggctgagcctgagacagaggaaggacaggaagtgttagac
gcagacgatggggatgatacggcaacagggcagaaacggaaaaaagatgaggaacaagag
tatgaggatggggaggaggacggagcagaaacagggggcaacacagaggtgcaagataca
gaagatgtggttatggatgaggatgaggaagttcccagcgacatggaggacattgatgag
gcccttatagccgagtatgaggagaaagatactgattctgacagtgtcaaccatcgcatc
aatactgtgctgcaattggctggtgaggtagcaggctacaagtttgacaccaagaagaaa
cagtgggcagaactcacactcagtttcccactggtggacagcaagctggacctgttggca
ctggtcgaaagtcacgtgcagagggtggttgttcacgaggtggtaggaatctctcggtgt
attctcggggaggagaaaggcccgcacggggggatggagttccatctcaagactgagggg
atcaacatgatggagatgtacaagcacgcagactttatagacgtgaacagactatactgt
aatagtatccaccatgtggccgacacgtatggcattgaggcggccaacaaagccatcata
aaggagatagaggctgtgtttgcagcgtacggtatccaagtcgaccatcgtcacctgtcc
cttgtggccgactacatgaccttcgagggcgtgtacaagccctttaatcgacgcgccctt
gagaccaacccctcgccgctccagaaaatgagcttcgagagcaccatgggttttatactg
tcctccgttattaacaagaatgttgataagctgttgtcgccttcgtctcagattgttgtt
ggcaagaatgttaccacgggaactggctgctttgaactatttacccccatggtcgtgtct
tag
DBGET
integrated database retrieval system
