Mya arenaria (softshell): 128239149
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Entry
128239149 CDS
T09995
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128239149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
maea03041
]
128239149
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128239149
Spliceosome [BR:
maea03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128239149
Complex B
128239149
Complex C
U2 SnRNP specific factors
128239149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
128239149
NCBI-ProteinID:
XP_052811607
LinkDB
All DBs
Position
1:complement(46817754..46836845)
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AA seq
737 aa
AA seq
DB search
MNNSGGDGKTRGFGFSGFSINKSDGGSVGGDGISRMGSSGGSRAMPGRTAGYKLKFGRSR
VADDDDYFDDDHDEGNADYLPAPGSPGAEGRKGDDSDSDDPLDAFMADIEKKVQDDCKPK
KVKKKEEKGVRDDIEQEDVEEAYYRYMEENPMAGIQADEAEDLNVEYDNEGNIIYVEKNK
IIEPLPPIDHSDIDYGPFERNFYEEHPDIAKLSEQNLVELREKLGIRVSGLAPPKPVCSF
AHFGFDDALLDAIRKSEYSKPTPIQAQGIPIALSGRDIIGIAKTGSGKTAAFLWPLLMHI
MAQRELEKGDGPIGLILAPTRELSQQIYQECRRFGKVYNIQTVCAYGGGSMWEQQKACQE
GAEIIVATPGRLIDLVKKKATNLKRVTYLVYDEADRMFDMGFEPQVRSIANHVRPSRQTL
LFSATFRRKVEKLARDILADPVRVVQGEAGVANEDVTQIVEILPPGPAKWTWLVKRLVEM
STLGSVLIFVTRKANSEELAANLRSRDFKALLLHGDMSQMERNEVIHAFKKKEVPILVAT
DVAARGLDIPSIKTVVNYDVARDIDTHTHRVGRTGRAGEKGFAFTLVTEKDKEFAGALVR
NLEDANQNVPQPLIDLAMQCPWFRGTRIKQSKGKRLMSVPGGSIGQKERPGLGADTSTKV
QDSTSFSSYRAGAVLGRGPQSDRMSAMKSAFTSQYKSNFIAATDSAPKTIPVGIHEPENP
NPHPDNANKRRKKSRWD
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacagtggaggtgacggaaagaccagggggttcggcttctctggattcagcatc
aataagtctgatggtggcagtgtaggtggtgatggaatttcccgcatgggtagctcggga
ggttcacgagcaatgcctggtcgtacagcagggtacaaactcaaatttggtcgatcccga
gttgcagatgatgatgactattttgatgatgaccatgatgaaggaaacgctgattacctg
ccagcgccgggcagcccaggggcagagggtagaaagggtgatgatagcgatagtgacgac
cctcttgatgcttttatggctgacattgagaaaaaggttcaagatgactgcaaacctaag
aaagtgaagaaaaaagaagaaaagggtgtgagagatgacattgaacaggaagacgtagag
gaggcatactaccgctatatggaggaaaatccaatggcgggaattcaggctgacgaggca
gaggatctcaatgtggagtacgacaacgagggaaacatcatatatgtagagaaaaataag
atcatagagcccctaccccctatagatcactcagacattgattatgggccatttgagaga
aacttttacgaagaacatccggacattgcaaaactctcggagcaaaacttggtggaactt
cgtgagaaacttggcatcagggtatctgggctagccccacccaagcctgtctgcagtttt
gcacattttgggtttgatgatgccttgcttgatgccattagaaagtcggaatactcaaaa
cccacacctatacaggcacagggcataccaatagctttgtcaggtcgagacattattggt
attgcgaagacgggtagtggtaaaactgcggcctttctttggcctctgctcatgcacata
atggctcagagagagttggagaaaggagatggcccaataggcctgattctggccccaact
agggaactttcacaacagatttaccaagaatgtagaaggttcgggaaagtatacaacatt
caaactgtgtgtgcttatggaggggggagtatgtgggaacagcagaaggcttgccaagag
ggagcagagatcatagttgccacccccggtcgtttgatagatctggtaaagaaaaaagca
acaaacctgaagcgtgtcacatatcttgtgtatgacgaagctgaccgcatgtttgatatg
ggatttgagccacaggttcggtccatagctaaccatgtgaggccttccagacaaactctg
ttgttcagcgcgactttccggcgaaaggttgaaaaactggcccgcgatattctagcagac
cccgtcagagttgtacaaggggaggccggagtggccaatgaggacgtgacacagatagtt
gagatcctaccacccgggccggccaagtggacctggctagttaaacgactggtggagatg
tccacattgggcagtgtactcatctttgtgacaaggaaagctaactcagaagagcttgcc
gcaaacctgcgcagcagagattttaaagcgttgctgttacatggagatatgagtcagatg
gaaaggaatgaagttatccacgcctttaagaagaaagaagtccccatacttgtggccact
gatgtagcagcgcgtggtctggacatcccatcaattaagacagttgtgaattatgatgtg
gcccgtgacattgacacacatacacacagggttggcagaacgggtcgtgcaggagaaaag
ggttttgcatttacgcttgtcacagagaaagataaggaatttgcaggggcacttgtgcgg
aaccttgaagatgcaaatcagaatgtgccacagcccctaattgaccttgccatgcagtgc
ccatggtttagagggacccgtattaaacagagcaaggggaagcgactcatgtccgtacct
ggaggctctattggacagaaggagaggcccggcttaggggcagacactagcacaaaggtc
caagattcgacaagtttcagctcctatagggcgggcgcagttctcgggagagggcctcag
tcggatagaatgtctgctatgaaaagtgctttcacttctcagtacaagtcaaactttata
gcagcgaccgattctgcacctaaaaccatcccagttggcatacacgagccagagaatcca
aaccctcatccagataatgctaataaaaggcggaaaaagtcgagatgggactaa
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