Mya arenaria (softshell): 128239766
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Entry
128239766 CDS
T09995
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
maea
Mya arenaria (softshell)
Pathway
maea03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128239766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128239766
03036 Chromosome and associated proteins [BR:
maea03036
]
128239766
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
128239766
Coactivators
SAGA/TFTC/STAGA complex
128239766
Chromosome and associated proteins [BR:
maea03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
128239766
STAGA complex
128239766
TFTC complex
128239766
SAGA complex
128239766
SLIK complex
128239766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_WDR41
WD40_RFWD3
TFIID_NTD2
WD_LRWD1
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_SPT8
eIF2A
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
Beta-prop_ACSF4
Ge1_WD40
Beta-prop_WDR75_2nd
Tricorn_2nd
WD40_like
PROPPIN
Cytochrom_D1
DDDD
Motif
Other DBs
NCBI-GeneID:
128239766
NCBI-ProteinID:
XP_052812146
LinkDB
All DBs
Position
7:complement(3563856..3598872)
Genome browser
AA seq
509 aa
AA seq
DB search
MKGSQIMENFKSSKFVLKMSRDSYTHLKRFLQEKHMNVLLNIIQEHMFIDVFDGVPRTKH
QIDMTSGGLLGEAARDANKTKILHGLLKEPDINIPVDDDDDGGGDGEDKPKKKKQKKDPL
LTKKSKNDPNAPATNRIPMPELKDQDKLERVNAYREALKRVKMGPTSLPSICFYTFHNAI
QGITGIDISEDSSLMCTCFGDSNIKIWSLTPNKLRVMKQMDELELIDKDADDVLERMMDE
RTAEDCKMLTGHSGPVFNTSFSPDKSSLTSCSEDGTVRLWSLHTWTNLVSYKGHNTPVWD
VKFSPHGHYFVSGGHDRVARLWTTDHYQPVRIFAGHYADVDCVQFHPNGNYVATGSSDRA
VRIFDVLNGSCVRTLTGHKGAIHSLCFSPDGKYLASTGLDATICLWDISNGNMLAQMRDH
TNTVYSLCFSRCGSVLASGGLDNTVKLWDVTKVIKETDKDMDASIPSSLSVNESPNLLIG
SFATKATPVLNIHFTQKNLLLAAGPMKVS
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaagggcagtcagattatggaaaactttaaatcgagcaagtttgtgttaaagatgtct
cgagactcttacacccatttgaaacgtttccttcaagagaaacacatgaatgttctcctc
aacatcatacaagagcacatgtttattgatgtatttgatggcgtaccgcgaaccaaacat
cagattgatatgactagtggtggtctacttggggaggccgcgagagatgccaacaagact
aagatactacacggtctattgaaggagcctgacattaacatccccgtggacgatgatgat
gatgggggtggggacggtgaagataaacctaagaaaaagaagcagaaaaaagatccattg
cttacaaagaaatcaaagaatgacccaaacgcaccagctacaaaccggatacccatgcca
gaactgaaggaccaagataagctagagagagtgaatgcctacagagaggcccttaagagg
gtcaagatggggcccacctccctgccatccatctgcttctataccttccataatgcaata
cagggaatcactggtatagacatatcggaagactccagcctgatgtgtacatgtttcggt
gactcgaacatcaaaatctggtccctcactccgaacaaactgcgcgtcatgaaacaaatg
gacgagctggaactcattgacaaagatgctgatgatgtcttagaacgcatgatggatgaa
aggactgctgaagactgtaaaatgctgacaggtcacagtggcccagtgtttaacaccagc
ttctctcctgataaaagcagcctcacatcatgttctgaggatggcaccgttcgactctgg
agtctccatacgtggaccaatcttgtatcatataaaggccataatacccctgtctgggat
gtgaaatttagcccccatggtcactattttgtgtccggtggtcatgacagggtggccaga
ctgtggacaacagaccactaccagcctgtcaggatatttgctggacattacgctgatgtt
gattgcgtacagtttcatccgaatggaaactacgttgccacgggttccagtgatcgtgct
gtcaggatatttgatgtgctgaacgggtcctgtgttaggacacttactggtcataagggt
gcaatacacagcctatgtttctcgccagatggaaaatatctagcttcaacaggtctggat
gctaccatatgcctttgggacatttctaatgggaatatgttggcacaaatgagagaccat
actaacacagtgtattccctgtgttttagtagatgtggttcggtactggcttctgggggt
cttgacaacacggtgaagctgtgggacgtcactaaagtcatcaaggaaacagataaggac
atggatgccagcatacctagttcattgtctgtgaatgaatctcccaatctcctcatagga
tcgtttgcaacaaaggccactccagttctcaacattcattttacacagaaaaacctgctg
ctggcagctggacccatgaaagtatcatga
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