Mya arenaria (softshell): 128239768
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Entry
128239768 CDS
T09995
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
maea
Mya arenaria (softshell)
Pathway
maea03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128239768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128239768
03036 Chromosome and associated proteins [BR:
maea03036
]
128239768
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
128239768
Coactivators
SAGA/TFTC/STAGA complex
128239768
Chromosome and associated proteins [BR:
maea03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
128239768
STAGA complex
128239768
TFTC complex
128239768
SAGA complex
128239768
SLIK complex
128239768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_SCAP
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_EIPR1
WD_LRWD1
eIF2A
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
WD40_like
Ge1_WD40
Beta-prop_WDR75_2nd
PROPPIN
Beta-prop_VPS8
Cytochrom_D1
DDDD
LisH_TPL
LisH
Motif
Other DBs
NCBI-GeneID:
128239768
NCBI-ProteinID:
XP_052812149
LinkDB
All DBs
Position
7:complement(3615255..3675670)
Genome browser
AA seq
671 aa
AA seq
DB search
MASLPQLSGQNVQIKAEGMTGVSDKQTLAAVLQFLKKHNLKGTEELLKKETGIKDTDVAP
ESSAQTASEVSHALAAYKSDDDPSLYDEDYINFKSFIESCLDVHKVELMTILYPVFVHMY
LELVYNGHEHHAKKFFLKYSLDQEPYYAEDLNKLSTVTKPEHMKGSQIMENFKSSKFVLK
MSRDSYTHLKRFLQEKHMNVLLNIIQEHLFIDVFDGVPRTKHQIDMTSGGLLGEAARDAN
KTKILHGLLKEPDINIPVDDDDDGGGDGEDKPKKKKQKKDPLLTKKSKNDPNAPATNRIP
MPELKDQDKLERVNAYREALKRVKMGPTSLPSICFYTFHNAIQGITGIDISEDSSLMCTC
FGDSNIKIWSLTPNKLRVMKQMDELELIDKDADDVLERMMDERTAEDCKMLTGHSGPVFN
TSFSPDKSSLTSCSEDGTVRLWSLHTWTNLVSYKGHNTPVWDVKFSPHGHYFVSGGHDRV
ARLWTTDHYQPVRIFAGHYADVDCVQFHPNGNYVATGSSDRAVRIFDVLNGSCVRTLTGH
KGAIHSLCFSPDGKYLASTGLDATICLWDISNGNMLAQMREHTNTVYSLCFSRCGSVLAS
GGLDNTVKLWDVTKVIKETDKDMDASIPSSLSVNESPNLLIGSFATKATPVLNIHFTRKN
LLLAAGPMKVS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccctaccacaattgtcgggtcagaatgttcaaattaaggccgaaggaatgaca
ggcgtctctgacaagcagaccttggctgcagtccttcaattcctaaagaagcataatctc
aagggaacagaagagctgctgaagaaagagacgggtataaaagacacagatgttgctcct
gaatcatcggcacagactgcttcagaagtttcacatgcgctcgctgcctacaaaagtgat
gacgatccatctctttatgatgaagactacattaacttcaaatcattcattgagtcttgt
ttggatgtgcataaggtggagctgatgacaatcctatatccagtgttcgttcacatgtat
ctggagttggtctacaatggacatgagcaccatgcaaagaagtttttcctgaagtactcc
ttggaccaggagccctactacgctgaagatctgaacaagctctccacagttaccaagcct
gaacatatgaagggcagtcagattatggaaaactttaaatcgagcaagtttgtgttaaag
atgtctcgagactcgtacacccatctgaaacgttttcttcaagagaaacacatgaacgtt
ctcctgaacatcatacaagagcacctgtttattgatgtatttgatggcgtaccgcgaacc
aagcatcagattgacatgactagtggtggtctgcttggggaggccgcgagagatgccaac
aagactaagattctacacggtctattgaaggagcctgacattaacatccctgtggacgat
gatgatgatgggggtggggacggtgaagataaacctaagaaaaagaagcagaaaaaagat
ccattgcttacaaagaaatcaaagaatgacccaaacgcaccagctacaaaccggataccc
atgccagaactgaaggaccaagacaagctagagcgagtgaatgcctacagagaggccctt
aagagggtcaagatggggcccacctccctgccatccatctgcttctataccttccataat
gcaatacagggaatcactggtatagacatatcggaagactccagcctgatgtgtacatgt
ttcggtgactcgaacatcaaaatctggtccctcactccgaacaaactgcgcgtcatgaaa
caaatggacgagctggaactcattgacaaagatgctgatgatgtcttagaacgcatgatg
gatgaaaggactgctgaagactgtaaaatgctgacaggtcacagtggcccagtgtttaac
accagcttctctcctgataaaagcagcctcacatcatgttctgaggatggcaccgttcgt
ctctggagtctccatacatggaccaatcttgtatcctataaaggccataatacccctgtc
tgggatgtgaaatttagcccccatggtcactattttgtgtccggtggtcatgacagggtg
gccagactatggacaacagaccactaccagcctgtgaggatattcgctggacattacgct
gatgttgattgcgtacagtttcatccgaatggaaactacgttgccacaggttccagtgat
cgtgctgtcaggatttttgatgtgctgaacgggtcctgtgttaggacacttaccggtcat
aagggtgcaatacacagcctatgtttctccccagatggaaaatatctagcttcaacaggt
ctggatgctaccatatgcctttgggacatttctaatgggaatatgttggcacaaatgaga
gagcatacaaacacagtgtattctctgtgttttagtagatgtggttcagttctggcttca
gggggtcttgacaacacggtgaaactgtgggacgtcacaaaagtcatcaaggaaacagat
aaggacatggatgccagcatacctagttcattgtctgtgaatgaatctcccaatctcctc
ataggatcgtttgcaacaaaggccaccccagttctcaacattcattttacacgaaaaaac
ctgctgctggcagctggacccatgaaagtatcatga
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