Mya arenaria (softshell): 128239794
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Entry
128239794 CDS
T09995
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
maea
Mya arenaria (softshell)
Pathway
maea03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128239794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128239794
03036 Chromosome and associated proteins [BR:
maea03036
]
128239794
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
128239794
Coactivators
SAGA/TFTC/STAGA complex
128239794
Chromosome and associated proteins [BR:
maea03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
128239794
STAGA complex
128239794
TFTC complex
128239794
SAGA complex
128239794
SLIK complex
128239794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_HPS5
WD40_RFWD3
WD_LRWD1
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_SPT8
eIF2A
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
WD40_like
Ge1_WD40
Beta-prop_WDR75_2nd
Beta-prop_VPS8
PROPPIN
Cytochrom_D1
DDDD
LisH_TPL
LisH
Motif
Other DBs
NCBI-GeneID:
128239794
NCBI-ProteinID:
XP_052812188
LinkDB
All DBs
Position
7:134930..158132
Genome browser
AA seq
671 aa
AA seq
DB search
MASLPQMSGQNVQIKAEGMTGVSDKQTLAAVLQFLKKHNLKGTEELLKKETGIKDTDVAP
ESSAQTASEVSHALAAYKSDDDPSLYDEDYINFKSFIESCLDVHKVELMTILYPVFVHMY
LELVYNGHEHHAKKFFLKYSLDQEPYYAEDLNKLSTVTKPEHMKGSQIMENFKSSKFVLK
MSRDSYTHLKRFLQEKHMNVLLNIIQEHLFIDVFDGVPRTKHQIDMTSGGLLGEAARDAN
KTKILHGLLKEPDINIPVDDDDDGGGDGEDKPKKKKQKKDPLLTKKSKNDPNAPATNRIP
MPELKDQDKLERVNAYREALKRVKMGPTSLPSICFYTFHNAIQGITGIDISEDSSLMCTC
FGDSNIKIWSLTPNKLRVMKQMDELELIDKDADDVLERMMDERTAEDCKMLTGHSGPVFN
TSFSPDKSSLTSCSEDGTVRLWSLHTWTNLVSYKGHNTPVWDVKFSPHGHYFVSGGHDRV
ARLWTTDHYQPVRIFAGHYADVDCVQFHPNGNYVATGSSDRAVRIFDVLNGSCVRTLTGH
KGAIHSLCFSPDGKYLASTGLDATICLWDISNGNMLAQMRDHTNTVYSLCFSRCGSVLAS
GGLDNTVKLWDVTKVIKETDKDMDASIPSSLSVNESPNLLIGSFATKATPVLNIHFTRKN
LLLAAGPMKVS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccctaccacaaatgtcgggtcagaatgttcaaattaaggccgaaggaatgaca
ggcgtctctgacaagcagaccttggctgcagtccttcaattcctaaagaagcataatctc
aagggaacagaagagctgctgaagaaagagacgggtataaaagacacagatgttgctcct
gaatcatcggcacagactgcttcagaagtttcacatgcgctcgctgcctacaaaagtgat
gatgatccatctctttatgatgaagactacattaacttcaaatcattcattgagtcttgt
ttggatgtgcataaggtggagctgatgacaatcctatatccagtgttcgtgcacatgtat
ctggagttggtctacaatggacatgagcaccatgcaaagaagtttttcctgaagtactcc
ttggaccaggagccctactacgctgaagatctgaacaagctctccactgttaccaagcct
gaacatatgaagggcagtcagattatggaaaactttaaatcgagcaagtttgtgttaaag
atgtctagagactcttacacccatctgaaacgtttccttcaagaaaaacacatgaatgtt
ctcctcaacatcatacaagaacacctgtttattgatgtatttgatggcgtaccccgaacc
aaacatcagattgatatgactagtggtggtctacttggggaggctgcgagagatgccaac
aagactaagattctacacggtctattgaaggagcccgacattaacatccccgtggatgat
gatgatgatgggggtggggacggtgaagataaacctaagaaaaagaagcagaaaaaagat
ccattgcttacaaagaaatcaaagaatgacccaaacgcaccagctacaaaccggataccc
atgccagaactgaaggaccaagacaagctagagcgagtgaatgcctacagagaggccctt
aagagggtcaagatggggcccacctccctgccatccatctgcttctataccttccataat
gccattcagggaatcacgggtatagacatatcagaagactccagcctgatgtgtacatgt
tttggtgactcaaacatcaaaatctggtccctcactccgaacaaactgcgcgtcatgaaa
caaatggacgagctggaactcattgacaaagatgctgatgatgtcttagaacgcatgatg
gatgaacggacagctgaagactgtaaaatgctgacaggtcacagtggcccagtgtttaac
accagcttctctcctgataaaagcagcctcacatcatgttccgaggatggcaccgttcga
ctctggagtctccatacatggaccaatcttgtatcctataaaggccataatacccctgtg
tgggatgtgaaattcagcccccatggtcactattttgtgtctggtggtcatgacagggtg
gccagactgtggacaacagaccactaccagcctgtcaggatatttgctggacattacgct
gatgttgattgcgtacagtttcatccgaatggaaactacgttgccacaggttccagtgat
cgtgctgtcaggatatttgatgtgctgaacgggtcctgtgttaggacacttaccggtcat
aagggtgcaatacacagcctatgtttctccccagatggaaaatatctagcttcaacaggt
ctggatgctaccatatgcctttgggacatttctaatgggaatatgttggcacaaatgaga
gaccatacaaacacagtgtattctctgtgttttagtagatgtggttcagttctggcttca
gggggtcttgacaacacggtgaaactgtgggacgtcactaaagtcatcaaggaaacagat
aaggacatggatgccagcatacctagttcattgtctgtaaatgaatctcccaatctcctc
atagggtcgtttgcaacaaaggccaccccagtgctcaacattcattttacacggaaaaac
ctgctgctggcagctggacccatgaaagtatcatga
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