Mya arenaria (softshell): 128240381
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Entry
128240381 CDS
T09995
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
maea
Mya arenaria (softshell)
Pathway
maea03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
128240381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128240381
03036 Chromosome and associated proteins [BR:
maea03036
]
128240381
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
128240381
Coactivators
SAGA/TFTC/STAGA complex
128240381
Chromosome and associated proteins [BR:
maea03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
128240381
STAGA complex
128240381
TFTC complex
128240381
SAGA complex
128240381
SLIK complex
128240381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
TFIID_NTD2
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_HPS5
WD40_RFWD3
WD_LRWD1
Beta-prop_EIPR1
Beta-prop_WDR19_1st
eIF2A
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_WDR75_2nd
Ge1_WD40
Beta-prop_VPS8
PROPPIN
Cytochrom_D1
DDDD
Motif
Other DBs
NCBI-GeneID:
128240381
NCBI-ProteinID:
XP_052812975
LinkDB
All DBs
Position
7:346021..383174
Genome browser
AA seq
558 aa
AA seq
DB search
MAELLRLVLQNGYIPNFHAKKFFLKYSLDQEPYYAEDLNKLSTVTKPEHMKGSQIMENFK
SSKFVLKMSRDSYTHLKRFLQEKHMNVLLNIIQEHMFIDVFDGVPRTKHQIDMTSGGLLG
EAARDANKTKILHGLLKEPDINIPVDDDDDGGGDGEDKPKKKKQKKDPLLTKKSKNDPNA
PATNRIPMPELKDQDKLERVNAYREALKRVKMGPTSLPSICFYTFHNAIQGITGIDISED
SSLMCTCFGDSNIKIWSLTPNKLRVMKQMDELELIDKDADDVLERMMDERTAEDCKMLTG
HSGPVFNTSFSPDKSSLTSCSEDGTVRLWSLHTWTNLVSYKGHNTPVWDVKFSPHGHYFV
SGGHDRVARLWTTDHYQPVRIFAGHYADVDCVQFHPNGNYVATGSSDRAVRIFDVLNGSC
VRTLTGHKGAIHSLCFSPDGKYLASTGLDATICLWDISNGNMLAQMRDHTNTVYSLCFSR
CGSVLASGGLDNTVKLWDVTKVIKETDKDMDASIPSSLSVNESPNLLIGSFATKATPVLN
IHFTRKNLLLAAGPMKVS
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggccgagttgttacgattggttttgcaaaatggatatatccctaacttccatgcaaag
aagtttttcctgaagtactccttggaccaggagccctactatgctgaggatctgaacaag
ctctccacagttaccaaacctgaacatatgaagggcagtcagattatggaaaactttaaa
tcgagcaagtttgtgttaaagatgtctcgagactcttacacccatttgaaacgtttcctt
caagagaaacacatgaatgttctcctcaacatcatacaagagcacatgtttattgatgta
tttgatggcgtaccgcgaaccaaacatcagattgatatgactagtggtggtctacttggg
gaggccgcgagagatgccaacaagactaagatactacacggtctattgaaggagcctgac
attaacatccccgtggacgatgatgatgatgggggtggggacggtgaagataaacctaag
aaaaagaagcagaaaaaagatccattgcttacaaagaaatcaaagaatgacccaaacgca
ccagctacaaaccggatacccatgccagaactgaaggaccaagacaagctagagcgagtg
aatgcctacagagaggccctaaagagggtcaagatggggcccacctccctgccatccatc
tgcttctataccttccataatgccattcagggaatcacgggtatagacatatcggaagac
tccagcctgatgtgtacatgtttcggtgactcaaacatcaaaatctggtccctcactcca
aacaaactgcgcgtcatgaaacaaatggatgagctggaactcattgacaaagatgctgat
gatgtcttagaacgcatgatggatgaacggacagctgaagactgtaaaatgctgacaggt
cacagtggcccagtgtttaacaccagcttctctcctgataaaagcagcctcacatcatgt
tccgaagatggcacagttcgtctctggagtctccatacatggaccaatcttgtatcctat
aaaggccataatacccctgtgtgggatgtgaaattcagcccccatggtcactattttgtg
tccggtggtcatgacagggtggccagactgtggacaacagaccactaccagcctgtcaga
atatttgctggacattacgctgatgttgattgcgtacagtttcatccgaatggaaactac
gttgccacgggttccagtgatcgtgctgtcaggatatttgatgtgctgaacgggtcctgt
gttaggacacttactggtcataagggtgcaatacacagcctatgtttctccccagatgga
aaatatctagcttcaacaggtctggatgctaccatatgcctttgggacatttctaatggg
aatatgttggcacaaatgagagaccatactaacacagtgtattccctgtgttttagtaga
tgtggttcggtactggcttctgggggtcttgacaacacggtgaagctgtgggacgtcact
aaagtcatcaaggaaacagacaaggacatggatgccagcatacctagttcattgtctgtg
aatgaatctcccaatctcctcataggatcgtttgcaacaaaggccactccagtgctcaac
attcattttacacgaaaaaacctgctgctggcagctggacccatgaaagtatcatga
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