Mya arenaria (softshell): 128241731
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Entry
128241731 CDS
T09995
Name
(RefSeq) TATA-binding protein-associated factor 172-like isoform X1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
maea03021
]
128241731
Transcription machinery [BR:
maea03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
128241731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
TOR1L1_N
HEAT_EF3_N
HEAT_2
HEAT_ECM29
TPR_TTI1_N
Motif
Other DBs
NCBI-GeneID:
128241731
NCBI-ProteinID:
XP_052814751
LinkDB
All DBs
Position
2:3464688..3522710
Genome browser
AA seq
1805 aa
AA seq
DB search
MTTRLDRLFLLLDTGSTALIRKSAAEQLGDVQKLHPYELGNLLNKLHGYLRSNNWETRIA
AAQAVQAIARNVPQWEPRGAPKQETQNEEAFLNGKLLLSKFDVQRVLENGASLLGSEGAQ
FNEDEKLSGLDERDRLAYQRQMLNKKLGLDMAGNLKLGLDTDLYTDEDLLTGMKKEDETK
PDTRQVSELLQLQLGTNLSARERNQAKRKARLMQKQISRDSPVLDRDGEPPAKKLKGENY
GVDSPASVDSAEEQEEWPFELFCEQQMSDLFHSAWETRHGAATGLREVVKIHGRGAGKSI
DTPVDQMLSVNQLWLSDLALRLMSVIALDRFGDFVSDEVVAPVRETCAQTLGVVMKFLEP
EGIQGVLAILLQLLQQKQWEVRHGGLLGIKYLLAVRQDMTVELLPSVLPFLYLGIQDVDD
DVRAVAASALVPVADTLIQVLPDQVPTVVSCLWEILVDLDDLTASTNSIMSLLATLHAHP
QANILDRLSKPLTELVPRLLPFFRHNIVSVRKAVLETVNTLVQVSSEKDPACSWLPSVLQ
PLLCHIYQRSLLETSPEILRLIPSVWGHVLEKATPLSLVAVATPWMGVWLSLAMQPSKIP
YDHSFLVEAKHPGRGPDSVSHRSRHSLEQDSPTPGTSKTQPMYIAGFESLNSSVQERDQN
VVRARMTAAGLFGVLCQRVTVPLNTLPTGYEKPSDSLTKLLTFHLNTRSAVQRIVIAEVL
YAWASCQECLCPPEVKSKVLETLSEGIYFDEIALGFTRLQTECRDFMASLKQQGINLDMI
VPQTLILSLDQAAALVGQDFEQVKSTLKPRALATLEDRRASLSTTVAQISADQQILSVRV
QSSLAKAAVLLDMIPEKLNPVIRPLMDCAKKEENATLQHEAAKCLSILLRQCMSRDPSPN
AKVVKNLCGFLCSDPAHTPAIIPQLNNNTAAEMNCDTFKGNITLAKICKVPDTDRRRTRL
PGSRSDMGVSPDLSKEEEQVQRQLCIQRRGGEITLCRVAGDFSDKLPTDLPALWETVTKY
LTENKDFEVTDSIAQEIVNSLQVLESIGPSLHSTLLPKLVESLQQLKTYLEHRYAGIRHI
SARCVGTLARLSTPDTMLFLIEVVIPMLEASDNITQRQGASEALYHVIESLGLDIVPYIV
LLIVPVLGRMTDQNTDVRTLATHCFASLIRLLPLETGVPDPPDMAATLSEQKQRDRVFLE
QLLDTSKLENYSIDVPIKAELRKYQQDGVNWLGFLSKYKLHGILCDDMGLGKTLQSICIM
ATDHYRRQVKYKESQSPDSSPIPSIVVCPPTLIGHWVYEIQKFIDEEYLNPLMYAGTPTE
RQRLQKKSKNHNLIVASYDVVRNDAEFFSSIHWNYCILDEGHIIKNGKTKISKAVKQLKC
NHRLILSGTPIQNNVLDLWSLFDFLVPGFLGTEKQFQARYGKPILASREAKSSSKEQEAG
ALAMETLHRQVLPFILRRLKEDVLQDLPPKIIQDYYCDLSPLQVRLYEDFARSQAQRGVE
DCVTSVKVSESKRGSTHIFQALQYLRKVCNHPALVLNQNHPKYTEVMASLKSQGSNIRDL
NHAPKLTALKQLLSDCGIGVDESAGQPGSETPVVNQHRVLLFCQLKGMLDIVETDLLKCQ
MPSVTYLRLDGSVPAGNRHDIVNRFNNDPSIDILLLTTHVGGLGLNLTGADTVVFVEHDW
NPMKDLQAMDRAHRIGQKKVVNVYRLITRGTLEEKIMGLQKFKITIANTIISQDNASLST
MGTDQLLDLFTLEEKRKGESASASEQKHSDKQDTVKAILDGLGDLWDEQQYESEYDINTF
MKSLV
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccagactagatcggttgtttctccttctggacactggttccacagcattgata
agaaaatcagctgcagagcaacttggagatgtacaaaaacttcatccatatgaacttgga
aacctcctcaataagttacatggctatctgcgaagtaacaactgggaaacacgaattgca
gcagcccaggccgttcaggcgattgcgcgaaatgttccacagtgggagccaagaggtgct
ccaaaacaagaaacacaaaatgaagaggctttcctcaatggtaaactgctgttgtcaaag
tttgatgttcaaagagtccttgaaaatggagcctccctgctgggttcagaaggagcacag
tttaatgaggacgaaaaattgtctggtcttgatgaacgagaccgccttgcctaccagcga
cagatgttgaacaagaagcttggcctggatatggccggcaaccttaagctcgggcttgac
acagacctttatacagacgaggatctgctgaccgggatgaagaaggaagatgaaacaaaa
cctgacacaaggcaggtgtcagaactgctacaactgcagctgggaaccaatcttagtgct
agagagcggaaccaggcaaaacggaaagccagactcatgcaaaaacagatttctagggac
tcaccagtactagatcgtgatggcgagcctcctgccaagaaattaaagggagaaaactat
ggtgtggactcacctgctagtgttgacagtgctgaagaacaggaagaatggccatttgag
ttgttctgtgagcaacagatgtccgacctgtttcacagtgcttgggagacgaggcatggt
gcagccacagggttacgtgaagtggtcaagattcatggcagaggtgctggtaaatccata
gatactcctgtagaccagatgttatctgttaaccagttatggctgtctgaccttgcactt
cgactcatgtccgttattgcactggacagatttggagactttgtctcagatgaggttgta
gcccccgtccgagagacatgtgctcaaacccttggcgtggttatgaagttccttgagcct
gagggaatacaaggggttctagccatcctgttacagttattgcagcaaaaacaatgggag
gtgcgccatgggggtctgcttggcataaagtatcttctggctgtaagacaggacatgaca
gtggaattgcttcccagtgttttaccattcctgtacctgggcatacaagatgttgatgat
gatgtacgtgcagtggcggctagtgctctcgtgcctgtggcggacacactgatacaggtc
ttgcctgaccaggtaccaacagtagtgtcgtgtctgtgggaaatacttgtggacctagat
gacctgacagcctctaccaattccatcatgtccctgctggctactcttcatgcccaccca
caggctaacatactggataggttgtccaaaccattaactgagcttgtgccgagactgctt
ccattcttcagacataacatagtctcggttagaaaggcagtgcttgagactgtgaacact
cttgttcaagtatcgtcagaaaaggatccagcatgtagttggctcccatcggtcttacag
ccactgctgtgtcacatataccagaggagcttgctggaaaccagcccagaaatcctcagg
ctcattccaagtgtctgggggcatgtcttggaaaaggccacgcccctttctctggttgct
gtggccaccccatggatgggagtgtggttatcactcgctatgcaaccttccaagattcca
tatgatcacagctttctggtggaggcgaaacatcctggaaggggcccagattctgtgtct
catcgtagtcgccactcccttgaacaagacagccccaccccggggaccagcaaaacccag
cccatgtatatagcagggtttgagtccctgaactcatctgtgcaggaacgggatcaaaat
gtggtgagggcgaggatgacagctgctggtctgtttggagttctatgccaacgtgtgaca
gtgcctcttaataccctccccactggctatgagaagccctccgactcgctgactaagtta
ctcacatttcatctcaacacacgctccgctgtacagaggattgtgatcgctgaggtgttg
tatgcatgggcctcgtgtcaggaatgtctctgcccccctgaggtcaagtccaaagtcttg
gagacactctcagaaggcatctactttgatgagattgcccttgggtttacgaggctgcag
acagaatgccgagacttcatggcaagcctgaaacagcagggaattaatctggatatgatt
gtaccacaaacattaattttaagcctggaccaggctgcggctctggtgggtcaagacttt
gagcaagtaaaatctactttgaagccccgggctctagcaacccttgaggacagacgggct
tcactaagtactacagttgcccagatctcagcggatcagcagatactctctgtgagagtt
caatcaagcctggcaaaagcagcagtcctgctagacatgattccagagaaattaaaccca
gttatacgaccgctcatggattgtgccaagaaggaggaaaatgcaactctacagcatgag
gcagccaaatgtctgagtatcctgcttcgacaatgcatgtctcgagatccaagcccgaat
gccaaggtggtaaagaatctgtgcgggttcctgtgttctgacccagctcacactcctgcc
ataataccccagctcaataacaacactgctgctgaaatgaactgtgatactttcaaaggg
aatattacgcttgccaaaatctgtaaggtgccagacactgatcgaaggagaacgagactg
cctggttctcgatccgatatgggtgtgtcccctgatctcagtaaggaggaagaacaggtt
cagagacagctgtgtatacagagaaggggaggggagataactctgtgtagggttgctgga
gatttctcagacaaattgcccacagacttacctgccctttgggaaacagttacaaaatac
ctcacagaaaacaaagattttgaagtaacagactccattgctcaagagattgtaaatagt
ctacaagtgctagaatctataggaccttcactacattcaaccctgcttccaaagttggta
gaaagtcttcaacagctgaagacctatttagaacacagatatgcagggattcgccacatt
tccgctcgttgtgtcggaaccctagcgcgtctttcaaccccagacacgatgttgtttctc
atcgaggttgttattcccatgttggaagcttcagacaatataacgcagagacagggggct
tcagaagctttgtatcatgttatagaaagtcttggactggatattgttccctacattgtc
ctgctgattgttcccgtactgggccggatgacagaccaaaatacggatgtaagaacgctg
gccactcactgctttgcatctctcatacgacttcttccactggagacaggggttcctgac
ccacccgacatggcagctactttgtctgagcaaaaacagcgagatcgggtattcctggaa
cagctgttggacacatccaagctggaaaactactctattgacgtgccaataaaggctgag
cttcgtaaatatcaacaggatggcgttaactggcttggattcctgagcaaatacaaactc
cacgggattttgtgtgatgatatgggtctcgggaagacacttcagtctatatgtataatg
gctacagatcactatagaagacaagtgaaatataaggaatctcagagccctgatagttca
cccatcccctcaattgtcgtctgcccacccaccctgattggtcactgggtgtacgagatt
cagaaatttatagatgaggaatacctcaaccccctcatgtatgcgggcaccccaactgaa
agacagagattacaaaagaaatccaaaaaccacaatttgattgttgcttcttacgacgtt
gtcagaaatgatgcagaattcttcagctctatacactggaactattgcatcctagatgaa
ggtcacattataaagaatggcaaaacaaagatctcaaaagcagtgaagcaattaaaatgc
aaccatcggctaatcctgtctggtaccccaatccagaacaatgtccttgacctttggtcc
ctgtttgattttctggttcccggttttctgggaacggagaagcagttccaggccagatat
gggaaaccgattcttgcaagcagggaggccaagagttcatctaaagaacaggaagctgga
gcgttggccatggaaactctacatcggcaagtcctaccctttatcctgcgacgacttaaa
gaagacgtactacaagatctgccccctaaaatcatccaggactattattgtgatttgagt
ccacttcaggtacgcttgtacgaggactttgcacgctctcaggcacagaggggtgtagaa
gattgtgtcacgtcggtcaaggtcagcgagagtaagaggggatccacacacatcttccag
gcgttgcagtatttacgcaaagtgtgtaatcacccggctcttgtgttgaaccagaaccat
cccaagtacactgaagtgatggcttctctcaaatctcagggttcaaacattcgtgatctc
aatcacgcccccaagctaacagctctaaaacagctgcttagtgactgtggtattggtgtg
gacgaaagtgccggccagcctgggagtgaaactcccgtcgtgaaccaacatcgggtgcta
ctattttgtcagctcaaaggcatgctggacatagtggaaactgatctactcaagtgtcaa
atgccatctgtgacttaccttcgactggatggaagtgtccctgctggtaacagacatgac
attgtcaacaggttcaacaatgatccatcaatcgatattctgctgctgacgacgcacgtt
ggcggactgggacttaatctgaccggtgctgacacagtggtgtttgtcgaacatgactgg
aatcccatgaaagatctacaagctatggatcgggcgcatcgtatcgggcagaagaaagtc
gtgaatgtttatcggcttatcactcgtggaactcttgaggaaaagattatgggtcttcag
aagtttaagattacgatagcaaacacaattatcagccaagacaacgcaagcttatcaaca
atggggacagaccaactactggacctattcactctcgaggaaaagcggaagggcgagagt
gcatctgccagcgaacaaaaacactcagataaacaggacacagtgaaggcaatattggat
ggtttgggcgatctctgggatgagcagcaatacgagtccgaatatgatatcaatacgttc
atgaaatctttggtgtga
DBGET
integrated database retrieval system
