Mya arenaria (softshell): 128243019
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Entry
128243019 CDS
T09995
Name
(RefSeq) ATP-dependent RNA helicase DDX1-like
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
maea03041
]
128243019
03016 Transfer RNA biogenesis [BR:
maea03016
]
128243019
Enzymes [BR:
maea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128243019
Spliceosome [BR:
maea03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128243019
Transfer RNA biogenesis [BR:
maea03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
128243019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
Cas3-like_C_2
CMS1
DIMCO_N
Motif
Other DBs
NCBI-GeneID:
128243019
NCBI-ProteinID:
XP_052816444
LinkDB
All DBs
Position
8:complement(5148687..5198908)
Genome browser
AA seq
729 aa
AA seq
DB search
MTAFEEMGVMREIARAVEDMDWSLPTDVQSEAIPMILGGGDVLMAAETGSGKTGAFCLPI
LQTVFETLKDLQEGKSSKMPTKHKGSSSWKMSVYDRGDAMSIDPDGLLCQSRDQQKWHGT
RSNKAVVGQGKYYYEATVTDEGLCRVGWSTDKASLDLGTDKWGYGFGGTGKKSYGKQFDS
YGEAFGINDTIGCYLDLQKGEIKWSKNGIDFGKAYDIPDHMRNEKFFAAVVLKNAEMSFN
FGTTPFKFNPPQGFTALFKAPKDSTVESKIAAGAATAKPAPNAPQAIIIEPSRELAEQTL
TQIQKFKTHLENPVPRELLIVGGVNVKDQVDVLTKGVDIVCGTPGRLEDLISTGKLLLSA
CRFFVLDEADGLLSQGYGDLINRLHAQIPKVTNDGKRLQMVVCSATLHSFDVKKMAERLM
YFPTWIDLKGQDSVPETVHHCVCMVDPLKDTRWKDLRQHVETDGVHSEDKIQPHGTTQET
YSEAVKILKGEYTVKAIEEHNMDRALIFCRTKIDCDNMEKYLRQRGQGKFSCVCLHGDRK
PQERKDNLQKFKDGKVKFLICTDVAARGIDVSGVPFVINVTLPDEKQNYIHRIGRVGRAE
RMGLAFSLVAAVKEKVWYHSNCTNRGRGCYNTKLTDRGGCCIWYNEPQLLSDVEEHLDIT
IDKVEPEMKVPINEFDGKVTYGQKRAGAGSGYKGHVETLAPAVMELAKLEKRVQTSFIDL
KYKKKFCVR
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgacagcatttgaggaaatgggagtgatgcgagaaattgcccgggcagtcgaggacatg
gattggagcttgcctacagatgtgcagtcagaggccattccaatgatccttggaggcggg
gatgtcctcatggctgcagagactggcagtggtaagacaggagccttctgtttgcccatc
ctacagaccgtgtttgagacgctgaaggacctacaggaaggaaaaagcagtaagatgccc
accaaacataaggggagctcctcctggaagatgagtgtgtacgacaggggcgacgctatg
tctattgaccctgatggtttgctgtgtcagagccgagaccagcagaaatggcatggcacc
aggtccaataaggctgtagtagggcaaggaaagtactactatgaagccacagtgacggac
gagggcttgtgtcgtgtaggctggtccaccgacaaggcttctctcgatctcggcacagat
aagtggggatatggctttggaggcacgggcaagaaatcgtatggcaaacagtttgattct
tatggcgaggcttttggcatcaatgacaccattggctgctaccttgacctacagaagggt
gaaatcaagtggtcaaagaatggaatcgactttggcaaagcatacgatattccagaccac
atgagaaatgagaagttctttgcagctgttgttttaaagaatgcagagatgagcttcaac
ttcggaacaactccgttcaagttcaatccgccccagggatttaccgctctgttcaaggcg
cccaaagatagcacagtggagtccaagattgcggctggggctgcgactgccaagcctgct
cctaatgccccacaggccatcataattgaaccatccagagagctagcagaacagaccctt
actcaaatccagaagttcaaaacccatttagaaaatccagtgccgagggagctgctgatt
gttggaggggtaaatgtgaaagaccaggtggatgtactcactaaaggggtggatattgtg
tgtgggacaccgggacgcttggaggacttgatttccactggaaaactattgctctcagcc
tgcagattcttcgttctggatgaagctgatggtttgctgagtcaagggtacggcgatctt
ataaaccggctccacgcacagataccaaaggtgaccaatgatggcaaacgtcttcagatg
gttgtgtgctccgcaactctccactcattcgacgtcaagaagatggctgagagactcatg
tatttcccaacatggattgatctgaaaggccaagactctgtaccagagacggtacatcac
tgtgtttgcatggttgacccattgaaagacactcggtggaaagatctgcgccagcacgta
gagactgatggggtacattctgaggacaaaatacagccccatggaaccactcaggagacc
tactcagaggcagtaaagattcttaagggcgaatatacagtcaaagcaatagaggaacac
aatatggaccgggcacttatcttctgtcggacaaaaattgactgtgacaacatggaaaaa
tatctcagacaaaggggacaaggaaagttttcgtgtgtttgtctccatggtgaccggaaa
ccccaagaaaggaaggacaatctacagaagtttaaggatggcaaagtgaagttcttgatt
tgtacagatgttgctgccagaggcatagatgtatcaggggttccctttgtgattaatgtg
acattacccgatgagaaacagaactacatccatcgaattgggcgcgttgggcgtgcagaa
agaatgggtctagcgttttccctggttgcagcagtaaaagaaaaggtgtggtaccattct
aactgcacaaacagaggccggggatgttacaacacaaaattgacagaccgtggaggatgc
tgtatatggtacaatgaaccacagcttttaagtgatgtggaggagcatcttgatatcacc
atcgacaaggtggaaccggaaatgaaggtccccatcaatgagttcgatggaaaggtcact
tacggacagaaacgagcaggggccgggagtggatacaagggtcatgtagagacactggcc
cctgctgtcatggaactggccaaactggaaaaaagagtgcagacttcctttattgacctc
aagtacaagaagaaattctgtgtgagataa
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