KEGG   Mya arenaria (softshell): 128246200
Entry
128246200         CDS       T09995                                 
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like
  KO
K15542  polyadenylation factor subunit 2
Organism
maea  Mya arenaria (softshell)
Pathway
maea03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:maea00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    128246200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:maea03019]
    128246200
Messenger RNA biogenesis [BR:maea03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     128246200
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_EML Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_IFT140_1st EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st WD40_Gbeta Beta-prop_WDR90_POC16_2nd ASA1 ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd DSE1_N Beta-prop_WDR19_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_Aladin CFAP251_N WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_WDR35_TULP_N eIF2A Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_HPS5 WD40_RFWD3 Beta-prop_NOL10_N Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_ELP1_1st Beta-prop_WDR11_2nd Beta-prop_VPS8
Other DBs
NCBI-GeneID: 128246200
NCBI-ProteinID: XP_052820349
LinkDB
Position
9:56022804..56064018
AA seq 901 aa
MAGTTAMNQEQGFFHMPKLQVPNYQKPRVFLPNFNQGQDGDKSRVQSGPPVYNATKFSGG
GIEIDFDGKRIRKTMVRKTVDYNTSVMKYLENRIWQRDKRDARSIQPDALYQLEVTPPCD
LQHKSMNCMTTKFMRQSTNKFRCPIFCISWTPEGRRLVTGASSGEFTLWNGLTFSFETIL
QAHETSVRAMVWSHNDQWMVTGDHAGFIKYWQTNMNNVKMYQGHKEPIRSISFCPTDSKF
ATSSDDGTVRIWDFLRCYEEKILRGHGADVKCVDWHPYKSLVASGSKDNQVPIKLWDPKS
GQSLATLHAHKFTVMDIKWNRNGNWLLTAARDHLVKLFDIRNLKEELQVFKGHKKEATAV
AWHPINEPIFASGGSDGAVMFWEAGTEKEIGAMEEAHDAIVWDLAWHPLGHVLASSSNDH
STKFWTRNRPGDPMRDKYNLNIAVIGPDGEPIDLDSSDVHLGETKGALPGMGLEYGLPPD
KEEKMEPAEELPAIPGLDWSADAEFFKEERSHHDDRGRRKAPYTRPIPRSFEQAWVTNQQ
PTIVKRDDAARTPKIKSLLSLDIAPPPKNKEIDRDSEERDDPYIGYYGEEDEDFRQDEDM
RGDEDYRGDLDFRGEEGPPSEPFNPDPSSFLPGAPSAGPQTSNQGPPGVALQQGQNMGPN
GNFPPHGGPPGSGPGMAPNDGQHMARGGYRQGAPDHRDQGYHGNDSQGSYDSFDHDYRGD
INDRAGSYHGQNSEEYEDNDRRYGDYDSRGRGARNQDGYRGRGRGRGRGSDSYNDRGAGG
NWDNNDYHGDGENYNEGNDRGGGGGYQNQNRGRGGYRGGGERGGRGGGGDRGIRGGDRGV
RGGDRGGRGGGGERGGRGGGSDRGGRGGRGNRGGQRGGYRGGGENRGGGRGRGRGRGFRG
N
NT seq 2706 nt   +upstreamnt  +downstreamnt
atggctgggacaacagcaatgaaccaggaacagggcttcttccacatgcccaaattacag
gtgcctaactaccagaaaccgcgagtattcctgccaaacttcaaccagggtcaggatggg
gacaagtcaagggtgcagtcaggacctcctgtctacaatgcaacgaagttctccggggga
ggtatagagattgactttgatggaaaacgaattcgaaagacaatggtccgaaaaacagtt
gactacaacacatctgtgatgaaatatttagagaatcgtatctggcagagagataagcga
gatgcacggtccatccagcctgacgccctctaccagttggaggtgacgccaccctgcgat
ttgcagcacaaatcgatgaattgtatgactaccaagtttatgaggcagtccacaaacaag
ttccgatgcccaatcttctgtatatcttggaccccagagggccgtaggctggtgactggt
gcatcaagcggggaatttacgctctggaatggcctcacattcagctttgaaactatcttg
caggcccatgagacgtcagtgcgagcaatggtgtggagccataacgaccagtggatggtg
acgggggatcacgcgggcttcatcaagtactggcagacaaacatgaacaacgtgaagatg
taccagggacataaagaacccatccgttccatcagtttttgccccaccgattcaaagttt
gccaccagttcagatgacggcactgtcagaatatgggacttcttgagatgttatgaggag
aaaatacttcgaggtcatggagcagatgtaaagtgtgtagactggcatccctacaagtct
ctagttgcctccggtagcaaggataaccaggtccctatcaaactctgggacccaaagtct
ggccagagtctcgccacactgcatgcccacaagttcacagtgatggacatcaagtggaat
cgcaacggcaactggcttcttacagctgctagggaccatcttgtgaagctttttgatatc
agaaacctgaaagaggagctgcaggtcttcaagggacataaaaaggaggcaactgccgta
gcctggcatcccattaatgagccaatttttgccagcggcggatcagatggagctgtcatg
ttttgggaggcagggacggagaaggagattggagccatggaggaggcccatgatgccatt
gtgtgggacctggcctggcatcccctgggacatgtactggcatcatcctcaaatgaccat
tccacgaagttttggacaaggaatcgccctggggatccaatgagagacaagtacaacctg
aatatagctgtgataggcccggatggggagccaattgacctagactcgagtgacgtccac
cttggagagacgaagggagcactgccgggaatgggcctagaatatggcctgcctccggac
aaggaggagaaaatggagccggctgaagagttgccggccatccctggtctcgattggtca
gcagacgcagagttcttcaaggaggaacgttcacaccatgatgaccggggccgccggaag
gccccctatacaaggcccattccacggtcctttgagcaggcctgggtcacaaatcagcag
cctactatcgtcaagagagatgacgcagccaggaccccaaagattaaatcattattgtca
ttagacatagcacctccaccaaagaataaagaaatagacagggactctgaagaaagagac
gacccatacattggttactatggtgaggaagatgaagacttccgccaggatgaggacatg
cggggggatgaagattaccgtggtgaccttgatttcagaggagaggaagggcctccatca
gaacccttcaacccggacccctcaagttttttgcctggggctcccagtgctggtccacag
acatcaaatcagggtcctccaggggtagcgttacaacagggacagaatatgggcccaaat
ggcaatttcccaccccatggaggaccccctggttctggccctggaatggcgcctaatgat
ggtcaacacatggctaggggtggctaccgtcaaggggcaccagatcacagagaccagggt
taccatggaaatgatagtcagggatcgtatgattcttttgaccatgattacagaggagac
attaatgacagggcagggtcatatcatggtcagaatagtgaggaatatgaagacaatgac
agaagatatggggactatgattctcgtggtcgtggggctaggaaccaggatggataccgg
ggtagaggaagagggagggggagagggagtgacagttacaatgacagaggggctgggggt
aactgggacaataatgattatcatggtgatggggaaaattacaatgaaggcaatgacagg
ggtggcggagggggatatcaaaatcagaacaggggtagaggcggatataggggtggaggt
gagagaggaggcagagggggtgggggagataggggaataagagggggagataggggtgta
agagggggagataggggaggtcgagggggtgggggtgaaagagggggcagaggaggtggt
agtgacagaggggggcgagggggaaggggtaatcgaggtggacagaggggtggatataga
gggggtggggaaaacaggggtggaggaagaggacgggggaggggtagggggttcagggga
aactga

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