Mya arenaria (softshell): 128246800
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Entry
128246800 CDS
T09995
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8-like isoform X1
KO
K18734
protein SMG8
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128246800
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128246800
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Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
PCI
Motif
Other DBs
NCBI-GeneID:
128246800
NCBI-ProteinID:
XP_052821204
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All DBs
Position
9:complement(21185479..21229481)
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AA seq
964 aa
AA seq
DB search
MSYFPTIGTTAINFPTPDYLLPHSWKENKVCVVSIIGKSGYQPFTSKASPFNNLLDADVF
KEVKGHLQDAINQGEIECYFDGDNNVVYLHHTSVHDTYRLVTAADRLSNATHKDFQQLWQ
HEECHYAKSFLFLFQISHLIVISHPGSSFDVTYVRLFRILDTIRMKVQKCVQDQLMDLPI
SKDWKYNGRPCSPRVLFVFETATLDYDPDEMVETVGYRPKPQKISPIKRLQHCMEDQIYK
ILRKSRVITNISNNSLFAVPANQEFVFIHVAQNHISDPVLFFLQQLRENTTQGDAEIGST
QSKSFQSSRSGTSLPGERSRSSPLSRGGGEFSFKEFLWQHIDMALTKGFDDNVGRHPVAA
NFELATSQTWFLLANRLYSLFFSEKLDPKIQPHCNTLKSLLETDLRFSENRCNKVLPMAE
SAYQENLPTHYVTAYHLSKLAQAKKVFSQFARGPGCDKYVGQLEESCERFWRNGRQLCEE
VSLTGNHCVNPLHRTDDDPETLSNSHLPCMSHSSQLKMVAACNCGRSKGDREDPFTHKTA
NFDFYEKLKDTCCGQLESYKFPTFQPSTSDIRAAAFSLKDLSAATQKLQVRDDDEKVDNE
KVADDAEAEVEVERDGDKTPDKDSLMPAASKADLAAVTQGTTNLSLALSLGQSGGGADLF
VGGHQSNCSPLPDQDAVSNPDHTDAHTPGSPVSDVHHVSSPVRQHSTTEYLPGMIHTDSP
SGLLPKFPSWSLVCLGKSTTYNQNQGLDMPGFLPGSNFLLPWDVTVQAERDKWPPVGETG
GKKDKWPTVGETGKKGKQKKSSRGKEMTELALRVFVGEEYECPRGHRFCCSGPEKIIKVS
STSSVKDNANKLINMDMPLYCPCLHCRSSKGYMAQLMRIYIVTPDGPLQVSVNPLVQPAP
HPCPTFHPGVGGEVDLTPGSIWVLRLPSVYMGDSGPYTIPSDIAQLPACRLLKGTFNFKE
MQSD
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgagttactttccaaccataggaacaacggctatcaactttcctacaccggactatttg
ttgccccattcatggaaggaaaacaaggtttgtgtggtctccatcattgggaagagtggc
taccaacctttcaccagcaaggcttcaccgttcaacaacctgctggatgctgatgttttt
aaggaagtgaaaggacatcttcaggacgccattaatcagggggagatagaatgttacttt
gacggtgacaacaatgttgtgtaccttcatcacacatctgtccatgacacataccgcctg
gtgactgccgcggacaggcttagtaatgccacacacaaggattttcagcagttgtggcaa
catgaggaatgccactatgccaagagctttctattcttgtttcaaatctcccacttgatt
gtgatttctcaccccggttcctcattcgatgtcacctatgtcagactgttccgaatactg
gatacgatcagaatgaaggtacagaaatgtgtacaggaccagctaatggacttgcccatt
tcgaaggactggaagtacaatggacgaccctgctccccccgtgttttgtttgtgtttgag
acggccacactagactatgacccggatgagatggtggaaacagttgggtacaggcctaaa
ccacagaaaatctctccaattaagcgtctacagcattgcatggaagaccagatatacaag
atactgaggaaatccagagtgattacaaatatcagtaacaactccctgtttgctgtaccg
gcaaatcaggagtttgtgttcatccacgtcgcacagaaccacatctcagaccctgtgtta
ttcttcctacagcaactacgagaaaacacaactcaaggtgatgcagaaattggctccacc
cagagtaaaagtttccagtccagcagatctggcaccagtctaccaggtgaaaggtcaagg
tcatcgccactctcccggggtggaggggagtttagctttaaggagtttctatggcaacac
attgatatggcccttacaaaagggtttgatgacaatgttgggaggcatccagtggctgct
aactttgagcttgccactagtcaaacttggttcttgctggccaatcgcctgtacagtctg
tttttctcggagaaactggaccccaaaatccagccacactgtaacactctgaaatccttg
ctggaaaccgacctcaggttctcagagaatcgatgtaacaaggtactgcctatggctgag
agtgcttaccaagagaacctccccacacactatgtgaccgcatatcatcttagtaagctg
gcacaagctaagaaggtgtttagccagtttgcacgagggccagggtgtgacaagtatgtg
gggcaacttgaggaatcgtgtgaacgattctggagaaatgggagacaactctgtgaagaa
gtcagcctaactgggaatcactgcgttaacccgcttcatagaacagacgatgaccctgaa
actttgtcaaacagccatttgccatgtatgtctcacagcagtcagctgaagatggtggct
gcttgtaactgtggccgtagcaagggcgaccgagaggatccatttactcataagacggca
aactttgacttctatgaaaagttgaaggacacttgctgtggacaactggagagctataaa
ttccccacatttcaacccagcacttctgacataagggcagccgccttcagtcttaaagac
ctgtctgcagcaacccaaaaacttcaagtgcgggatgatgatgaaaaagttgacaatgaa
aaagttgcggatgatgcagaggcagaggttgaggtagagagggacggtgacaaaactcct
gacaaagattctcttatgccagcagccagcaaagcagatttagctgcagtcacgcaggga
acaactaatcttagtctcgcccttagtcttggccaatcaggtggtggcgctgatttgttt
gttggtggacaccagagtaactgcagtcctctccctgaccaagatgcagtaagcaatcca
gatcacacagatgctcatacacctggctcaccagtttcagatgtccaccatgtcagctcc
cccgttcggcagcactcaacaactgaataccttccaggaatgatccatacggattcacca
tctggccttctgccaaagtttccttcctggtctcttgtgtgtcttggaaagtcaacaaca
tacaaccaaaatcaaggtttagatatgcctggcttcttgcccgggagtaactttctgctc
ccatgggatgtgactgtgcaggctgagcgggataaatggcccccagtgggagaaacaggg
ggcaagaaagataaatggcccacagtaggtgaaacaggaaagaaaggcaaacagaagaaa
tcttcaagagggaaagagatgactgagttagcattacgagtctttgtaggggaagaatat
gagtgtccccgaggtcatagattctgctgtagtggcccagagaagatcattaaagtctca
agtaccagctctgtcaaggataatgccaacaagcttatcaacatggacatgcccctatat
tgtccctgcctacactgccgatcctctaaaggttacatggcccagctaatgaggatctat
atagtcacccctgatggaccactacaggtcagtgtaaaccctttagtgcaaccagcaccc
cacccttgcccaacttttcacccaggggtcggaggggaggttgatttgactcctgggtca
atctgggtactacgacttccatcagtgtatatgggagactctggcccctacacaatcccc
tctgacatcgctcaacttccggcctgcaggctccttaagggcacgttcaacttcaaggaa
atgcagagcgactga
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