Molothrus aeneus (bronzed cowbird): 136557848
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Entry
136557848 CDS
T11621
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
maen Molothrus aeneus (bronzed cowbird)
Pathway
maen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136557848 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maen03019
]
136557848 (PATL1)
Messenger RNA biogenesis [BR:
maen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
136557848 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
136557848 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
136557848
NCBI-ProteinID:
XP_066408123
LinkDB
All DBs
Position
6:complement(9089350..9096538)
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AA seq
764 aa
AA seq
DB search
MFRYPSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKA
SSSREPDGPVGNDGDVLGDPEDALAERLTRLVIDSELEDPAIMQAVHTRDPPQQPGGLNS
SIWDSSAMLRRIRGPLLAQEMPSVSVLDYALPQRPPQARDEERDPSERALPRRSSSPIIG
SPPVRAIPIGTPPKQAAIPNFNQQILCPKPVHIRATMQQRYPAPYGERMSPNQLCNVPNS
SLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMSPAGGFRAFFGAPPAPPPSQLPHPPGPGSHLQNLRPQPQMFRPDTTHLHPQHRRLL
HQRQQQNRNQHRSLNGSGGDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQST
DPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGK
LTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYL
LSLEGERPALMGERKQKICDMYDNLRGKAPGQDRPSDDHFMQIMCIRKGKRLVARILPFL
APEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLPQ
SSAAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNTELMQDNQWTELMLMATRELL
RIPQGALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLVQGIR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtacccgtccctggaggactgcccgctggacgaggatgaagatgccttccag
gccctgggggaggaggatgaagacatcgaccagttcaacgatgacaccttcggggccggt
gccgtcgatgatgactggcaggaggcccacgagcggctggcggagctggaggacaaggcc
agctcaagccgggagccggatggtcccgttgggaatgacggggacgtcctgggcgatccc
gaggacgcgctggccgagcggctgacgcgcctcgtcatcgacagcgagctggaggacccg
gccatcatgcaggccgtgcacaccagggatcccccgcagcagcctggagggctgaattcc
agcatctgggacagctcagccatgctgcggcgcatccgggggccgctcctcgctcaggag
atgccgtcggtgtccgtgctggattatgccctgccccagaggcctccgcaggctcgggat
gaggagcgggatccatcggagcgggcgctgccccggcgctcctcctcccccatcatcggg
agccccccggtccgggccattcccatcggcaccccacccaaacaggccgccatcccaaac
ttcaaccagcagatcctgtgtcccaagcctgtccacatccgagctaccatgcagcagcgt
tatcccgctccctatggagagaggatgtcccccaaccagctctgcaatgttccgaattcc
tccctcctgggccacccgttcccccacagcgtctctcccgtcctcacacacctgcagaga
gcccagctgctcggaggagcccaggccggccgaatgtcccccagccagtttgcccgtgtg
tcggggctggtggggagcccgctgccctcggtgaaccccaagctgctccagggcagagtt
gggcagatgatgtccccagccggagggttccgtgcctttttcggggctccccccgccccg
cccccctcgcagctgccgcaccctccgggccccggatcccacctgcagaacctgaggcca
cagccccagatgttccggccagacacgacccacctgcacccgcagcaccgccggctcctg
caccagcggcagcagcagaaccgcaaccagcaccggagcctcaacggctctgggggggac
cgagggggccaccggagcagccatcaggagcagatccgtaaggatccctacgccaacctc
atgctgcagcgggaaaaggactgggtgtccaagatccagatgatgcagctgcagagcact
gatccctacctggatgattattattatcagaattacttccagaagctggagaagttggca
gcagccgaggaagtgcacggtgacggtcccaagaaggagcgcactaaactcatcacccct
caggtggccaagctggagcacacctacaagccagtgcagtttgagggctcgctgggaaag
ctcaccgtctccagtgtcaacaacccccggaagatgattgacgccgtggtgacgtcccgc
agcgaggatgatgagacgaaggagaagcaggttcgggataagaggcgacagactctcgtc
accattgagaagacgtacagcctcctcctggacgtggaggactacgagcgccgctacctc
ctgagcctggaaggggagcggccagccctgatgggagagaggaagcagaagatatgtgac
atgtatgacaatctgagggggaaggcacctgggcaggacaggccgagcgatgaccacttc
atgcagatcatgtgcatccggaaaggaaagcgcctggtggcccggatcctgcccttcctg
gctccggagcaagcagccgatgtgctcatggccacagccaggaacctgcccttcctcatc
aagaaggatgctcaggatgaggtgcttccctgcctcttgaggcccttttcccatgtcctc
taccaccttcccttgggaacagtcaccagccttgtgcagcagctcacgaacctacctcag
agctccgccgctcccaccaacctgcacctcactgctgtgctccaaaacaagtttggtctg
tccctgctgtacctggtcctgagccgaggggaggaattgcagagctcggacacgaacaca
gagctgatgcaggacaaccaatggacggagctgatgctgatggcaacccgggagctgctg
cggatccctcagggagccttggcaaagcccgtgtccatcccctccaacctgatctccctc
ttctcccgctacgttgaccagcagaagctgaacctgctggagacgaaattgcacttagtg
caggggatccggtag
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