Molothrus aeneus (bronzed cowbird): 136557992
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Entry
136557992 CDS
T11621
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
maen Molothrus aeneus (bronzed cowbird)
Pathway
maen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
maen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
136557992 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maen03019
]
136557992 (CLP1)
Enzymes [BR:
maen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
136557992 (CLP1)
Messenger RNA biogenesis [BR:
maen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
136557992 (CLP1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_18
ATP_bind_1
TniB
AAA_22
AAA_16
nSTAND3
MMR_HSR1
CbiA
PduV-EutP
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
136557992
NCBI-ProteinID:
XP_066408325
LinkDB
All DBs
Position
6:9766770..9769130
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AA seq
425 aa
AA seq
DB search
MADEGGEEKKQVAKFELERETELRFEVEAGQTVQLELLTGMAEVFGTELTRNKKFTFDAG
AKVAVFTWHGCTVQLSGRTEVAYVSRDTPMLLYLNTHTALEQMRRQAEREDERGPRVMVV
GPTDVGKTTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSL
QAPLVYHFGSTTPGTNIKLYNKITSCLADVFNQRCEVNRRASVSGCVINTCGWVKSSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFDVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTADSPDDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgagggcggcgaggagaaaaagcaggtggccaagttcgagctggagcgggag
acggagctgcggttcgaggtggaggcggggcagacggtgcagctggagctgctgaccggc
atggccgaggtgttcggcaccgagctcacccgcaacaagaagttcacgttcgacgcgggc
gccaaggtggccgtgttcacgtggcacggctgcaccgtgcagctcagcggccgcaccgag
gtggcctacgtgtcgcgggacacgccgatgctgctgtacctgaacacgcacacggcgctg
gagcagatgcggcgccaggccgagcgggaggacgagcgcgggccccgcgtcatggtggtg
gggcccaccgacgtgggcaagaccaccgtgtgccgcctgctgctcaactacgccgtgcgc
ctgggccgccggcccaccttcgtggagctggacgtggggcagggctcggtgtccatcccc
ggcaccatgggcgcgctgtacatcgagcgcccggccgatgtggaggagggcttctccctg
caggcccccctcgtctaccacttcggctccaccacgcccggcaccaacatcaagctctac
aacaagatcacgtcgtgcctggccgacgtcttcaaccagcgctgcgaggtgaaccgccgg
gcgtcggtgagcggctgcgtcatcaacacctgtggctgggtcaagagctcgggctaccag
gcgctggtgcacgccgcctccgcctttgaggtggacgtggtggtggtgctggaccaggag
cgcctctacaatgagctcaagcgggacctgccccactttgtgcgcaccgtgctgctgccc
aagtccggcggcgtggtggagcgctccaaggacttccgccgggagtgccgggacgagcgc
atccgcgagtacttctacggcttccgcggctgcttctacccccacgccttcgacgtcaag
ttctccgacgtcaagatctacaaggtgggcgctcccaccatcccggactcgtgcctgccg
ctgggaatgtcgcaggaggacaaccagctgaagctggtgccggtgacgccggggcgggac
atggtgcaccacctgctgagtgtcagcaccgccgacagccccgatgacaacatctccgag
accagcgtggccggcttcatcgtggtcactggcgtggacctggagcgccaggtcttcacc
gtgctgtccccagccccgcgccccctccccaagaacttcctgctcatcatggacattcgc
ttcatggacctcaagtag
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