Molothrus aeneus (bronzed cowbird): 136558596
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Entry
136558596 CDS
T11621
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
maen Molothrus aeneus (bronzed cowbird)
Pathway
maen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
maen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136558596 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
maen03041
]
136558596 (SF3B1)
03036 Chromosome and associated proteins [BR:
maen03036
]
136558596 (SF3B1)
Spliceosome [BR:
maen03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
136558596 (SF3B1)
Complex B
136558596 (SF3B1)
Complex C
U2 SnRNP specific factors
136558596 (SF3B1)
Chromosome and associated proteins [BR:
maen03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
136558596 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
PIK3R4-like_middle
Adaptin_N
Phage_T7_Gp15
Motif
Other DBs
NCBI-GeneID:
136558596
NCBI-ProteinID:
XP_066409244
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All DBs
Position
7:complement(10914683..10938226)
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacaaattcgagaaattcaagga
aaaaagcctgctcttgatgaagcacaaggagtaggccttgattccacaggatattatgat
caagaaatttatggtggcagtgacagcagatttgctggatatgtcacttctattgcagct
actgaattggaagatgatgatgatgactacccttccacaagtctgcttggccagaagaag
ccaggataccatgctccagtggcattgcttaatgacataccacagtctactgaacagtat
gatccttttgcagaacaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
actccagaccctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcttctcagccaccttcaaaacgcaagcggcgttgggatcag
acagctgatcagactcctggtgctacacctaagaaattgtccagttgggatcaagcagag
actcctgggcacaccccatctctgcgatgggatgaaaccccaggccgtgcaaagggaagc
gaaactccaggtgccaccccaggctccaagatctgggatccaactcccagccatacccca
gcaggagctgcaacgcctggccgggacacgcctgggcacgcaacaccgggccatggaggt
gccacttccagtgcacgcaaaaatcgatgggatgaaacccccaaaacagaaagagatact
ccaggccatggcagtggctgggctgagacacctcgtacagacagaggtggtgattccatt
ggtgagacaccgaccccaggagcgagcaaaaggaagtcccgctgggatgaaacacctgcg
agccagatgggcggcagcactcctgttctgacacctggcaaaacacccattggaacccca
gctatgaacatggcaacccctacaccaggtcacatcatgagcatgactcctgaacagctg
caggcttggcgctgggagagggaaattgatgagagaaacagaccactttctgatgaggaa
ttggatgctatgtttcctgaaggatataaggttctcccacccccagctggttacgtgccc
atccgtactcctgctcggaagctcacagcgactcccacgccgctggggggtatgacaggg
ttccacatgcagaccgaggaccgcactatgaagagtgttaatgaccagccatcgggcaac
ctgccgttcctgaaaccagatgatatccagtacttcgacaagctgctggttgatgttgat
gaatcgactctgagtcctgaggaacagaaggagagaaaaataatgaaattacttctgaaa
ataaagaatggcacacctcccatgcgaaaggctgcgttgcggcaaattaccgataaagct
cgggaattcggagcagggccactgttcaatcagatcctgcctctgctgatgtctccaaca
ctcgaagatcaggagcggcacttgcttgtcaaagtcatcgacagaattctttacaaattg
gatgacttggtccgaccatacgtacacaagatccttgtcgtcattgaaccactgctgatt
gatgaagactactatgctagagtggaaggcagagaaattatttcaaacttggctaaggct
gcaggtttggcaaccatgatctccacaatgcgacctgatattgataacatggatgagtat
gtcagaaatacaacagctcgagcctttgctgttgttgcatctgctctgggcattccttct
ctgttacccttcctgaaagctgtctgtaaaagcaaaaaatcctggcaggccaggcacact
ggcatcaagattgtacagcagatcgctattcttatgggttgtgctatcctgcctcatctc
aggagcttggttgaaattattgagcatgggctggtggatgagcagcagaaagttcgcacc
atcagtgctttggccattgctgctttggctgaggcagccactccctatggtattgagtca
tttgactctgtcctgaagcccttgtggaagggtatacgtcaacacagaggaaagggtttg
gctgcgttcttgaaggcgattggttacctgatcccactcatggatgccgagtatgcaaac
tactacaccagagaagtcatgctgattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtgttaaaggtggtaaagcagtgttgtggtacggatggtgttgaagca
aactacattaaaacagaaatcttgccacccttcttcaaacatttctggcagcacagaatg
gcactggacagaagaaattatagacagttggttgatacgactgtggagctggcaaataaa
gttggagcagcagaaattatttctagaattgtggatgatctgaaagatgaggctgaacag
tacagaaagatggtcatggaaacaattgagaagataatgggaaatctgggagcagcagac
attgatcacaaactggaagaacagctcattgacggtattttgtacgccttccaggaacag
acaacagaggattctgtgatgctgaatggttttggcacagtggttaatgctctaggcaaa
agggtgaaaccctacttgccacagatctgtggtacagttttgtggcgtttgaacaacaaa
tcagccaaagtcaggcagcaggccgctgacctgatctctcgtactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgttttgtatgagtacctgggt
gaagaatatcctgaagtactgggcagcatacttggagcactgaaggctattgtgaacgtt
ataggtatgcacaagatgacaccaccaatcaaagacctgctgccacggttgacacctatt
ttgaagaacagacatgagaaagtacaggaaaattgtattgatcttgttgggcgtattgca
gacagaggtgcagagtatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gaattattaaaagctcacaagaaagctatcagaagagccacagtgaacacttttggttat
attgcaaaagctattggacctcacgatgtattggccacactgctcaacaacttgaaagta
caggaaaggcagaacagagtatgtactactgtagcaattgctattgtggctgaaacatgc
tcacccttcacagtgctgcctgcactcatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtgttaaaatctctttctttcctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatctggta
cacagacaaacagccagtgctgtggtgcagcacatgtcccttggtgtttatgggtttggc
tgtgaagattctcttaatcacttgttaaactatgtgtggcccaacgtgtttgaaacctct
cctcacgtcatccaggcagttatgggggctctggagggcctcagagtggctattgggccc
tgcaggatgttacagtactgcttacagggtttgtttcaccctgccagaaaagtcagagat
gtttattggaagatctacaattcaatctacatcggctcacaggatgctctgatagcacat
tacccaagaatctataatgatgaaaagaacacctatattcgttacgaacttgattacatc
ttataa
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