Molothrus aeneus (bronzed cowbird): 136559409
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Entry
136559409 CDS
T11621
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
maen Molothrus aeneus (bronzed cowbird)
Brite
KEGG Orthology (KO) [BR:
maen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
maen03009
]
136559409 (PDCD11)
Ribosome biogenesis [BR:
maen03009
]
Eukaryotic type
90S particles
Other 90S particles
136559409 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_PDCD11
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
OB_RRP5_4th
Spt6_S1
Suf
OB_RRP5
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
TPR_14
TPR_19
PRP6_TPR
CFAP70_mid_TPR
DUF8501
CFAP70_TPR_C
TPR_YpiA_C
TPR_15
ARM_TT21_5th
TPR_CcmH_CycH
ARM_TT21
TPR_16
TPR_12
Motif
Other DBs
NCBI-GeneID:
136559409
NCBI-ProteinID:
XP_066410695
LinkDB
All DBs
Position
8:23771512..23798950
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AA seq
1834 aa
AA seq
DB search
MASMEENFPRGGIQKKPAEGKTPKPKSERDNLFDVQHEEKSQKRKRSQKDQEKQKRFKAD
KTVKAAVKENVMNIGPLTIEALSEGMLLLGCIKEVSHYELTISLPNGLSGFVPVTQISDA
YSNLLTKQVAQGEVLEELNSLPDLFSPGTLVRCIVTSIEKSDDGRRSVKLSIDPKKVNKG
LNSTALAAGMLLSGSVLSVEDHGYLIDIGVTGTHAFLPHQKAKNYIKAAKKGPDLKIGQS
LNCLVVEVKNEGRVVCLSIDRLEVAASIATERQNWALSNLLPGLVVKARVQKVAPLGLKL
TFLSYFTGIVDFMHMDPEKSMSYSPDQVVKACVLSVHPTSRAVRLTLRPPFLHAGGAPRQ
LPGQRMGAVLEEATMKAFYKQFGAIFELDDGTLAFARLKHLSKTRKSFKSGAFKEGCKHK
CRIIDYSLMDEMCIVSLKNQIIEARFLQYQDIHTGDVVQGKVLSLKPIGMQVKVADGIRG
LVPSLHLSDVILKQPEKKFNIGDEVKCRVLECNPGGKKLILTLKKSLVQSKLPVLSNYED
AKPGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELGSEPISCPDKVFYEGQVLKVMVLK
CEPQQERLLLSFRLSSKPGPEDKWKCTPKEKQEMKYQIGEIVDVKILKKKDNGLEVSILE
DEDNVVAWIPMLHLSDFAATSKLLWHCLQEGDVLPRVMYLSDKGEHIILSRKSAVISAIQ
EEQVVRSFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVV
GQTVIAKVMSIDEEKQRVLLNLKVSECSSGDSAAESFGLLNQYFKELKEIRDLLKRGEPS
ICELVPGKRVHLVVQDVREDGSALFSGSSVTGLTVTATRYHLGDKNIARGEKRKALILHV
DALTSEVFVSLREELLKQRPKQRLRENSQHSVVVQHITEHFAVASLPETGQLAAVPIACH
LNDTFRFDSEKLRVGQTISATLKAVKENKHGVLLAVQGPAKKNVFVRVRNESETALEEML
PALKHSLSPGDVVTGTVKSIKPTHVTVAIDDKLTGSIHASRILDEVPIGSFPTSTLKAGQ
KVTARVIGGRDVNTHRCLPITHPHFTQSIPELSIRPSEKEGEFTAMLNLKEEGSLKKLGL
YDVGQTVTCFVKKYNMLKNWLEVEVAPDIRGRVPHLLLSLNTKVLKHPEKSFKSGQAISA
TVTGTDATETCLYLSLTGIQSLEQDTISVGMVTKVTPHVGLTIALPGGKAGKVSLFHLND
TYTEDPLGSFKVGKIVRCYILSNENGKIQLSLRQSRLNPKINSKVEDIEITSIKDVKKGQ
LVRGYVKSITPSGVFFGLSTSLLGRILFQNVSPYFVQKHSLYEKYLPEGKLLTAKVLGVN
RKEKRIELSLLPEDTGMPSVLPESLGLPQYGAEEEKREADDEKKREEPKLKKKRRRGNDE
SSQEAKPKKRKICPADENDSGIEVYYREEEEDDQEEEAAKKKSTVRKPGEAPRLQVSMGF
TWDEDNTMDIPVLDQKEESSESEEEEDVQSKLKKRTKKEKELEKQKKEKELCKVEAALMD
PSRQPQSADDFDRLVLGSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEK
LNVWVALLNLENMYGTEETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTM
LKRFRQEKSVWLKYASFLLKQGQAEATHRLLERALKALPTKEHVDVISRFAQLEFHSGDT
EHAKALFESTLSSYPKRTDIWSIYMDIMIKHGSQKEIRDIFERVIHLSLAPKKMKFFFKR
YLDYEKKFGTEQSVLAVKRAALEYVETKSSLADT
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atggcatccatggaagaaaactttcctcgagggggcatccagaagaaacctgcagaggga
aaaacacccaagccaaagtcagagcgggacaatttgtttgatgttcaacatgaagaaaaa
tctcagaaaagaaaaaggagccagaaggaccaagaaaagcagaaaaggttcaaggcagac
aaaactgttaaagctgctgttaaagaaaatgttatgaatattggaccactcacaattgag
gcactcagtgaggggatgctgctccttggctgtatcaaagaggtcagtcactacgagctc
accatcagtttgcccaacggcctctctggatttgtgccagtcacgcagatcagcgatgcc
tacagcaacctgctcaccaagcaggtggcccagggagaagtcctggaggagttgaattcc
ctcccagacctgttttctccagggacactggtcaggtgcatcgtgaccagcattgagaaa
agtgacgatggacgccgcagtgtcaagttatcaattgaccccaagaaggtcaacaagggc
ctgaactctacagcactagcagcaggcatgctgctctctggttctgtgttgagtgtggaa
gaccatggctacctcatagatattggtgtcactggaactcatgctttcctgcctcatcag
aaagccaaaaattacatcaaagcagccaagaaggggcctgacttaaaaataggccagagc
ctgaactgcctggttgtggaagtgaagaatgagggcagggtggtctgtttgtccatcgat
cgattggaggtggctgcatccattgccacagagcgacagaactgggcactctctaattta
ttgccagggctggtggtgaaagctcgagtgcagaaggtggccccacttgggttgaaactg
acttttctgtcttacttcactggcattgtggatttcatgcacatggacccagagaaatcc
atgagctattctccagatcaagtggtgaaagcctgtgtgctgtccgtacaccccacatcg
cgggcggtgcggctcacgctgcgcccgcccttcctgcatgctggaggagccccacggcag
ctccccgggcagcgcatgggggccgtgctggaggaggccaccatgaaagccttctacaaa
cagtttggggccatctttgagcttgatgatggcactctggcatttgcacggttgaaacat
ctttcaaaaaccagaaaatcctttaaatctggggcatttaaggaaggttgcaaacataaa
tgtcggatcattgactacagcctcatggatgagatgtgtattgtatctctgaagaaccag
attattgaagcacggtttctgcagtaccaggatatccacacaggtgatgtggtgcagggc
aaagtgctctctctaaaacccattgggatgcaggtgaaagtggctgatgggattagagga
cttgtgccatccctccatctctctgatgtgattctgaagcagcctgagaagaagttcaac
ataggagatgaagtcaagtgtcgggtgctcgagtgcaatcctggaggaaagaagctgatt
cttactctaaagaaaagtctcgtccagtcaaagcttccagtcctctcaaattacgaagat
gcaaagccaggcctgatcacacatggctttgtagtgtgtgcaagggagtttggctgcatt
gtgaagttctacaatgatgtcaaaggtctggtacccaagaatgagctgggctcagaaccc
atatcttgtccagataaagtcttctatgaaggccaggttcttaaagtaatggtcttaaaa
tgtgagcctcagcaggaaagactcttgttgtccttcagattatcaagcaaacctggccct
gaggacaaatggaaatgtactccaaaggagaaacaggaaatgaagtaccaaataggagag
atagttgatgtgaaaatcttgaagaagaaagataatgggttagaagtttccatcttagaa
gatgaagacaatgtggtagcctggatccccatgctgcacctctctgactttgctgctacc
tccaagctcctgtggcactgtcttcaagagggagatgtcctgcccagagttatgtatcta
agtgacaagggagagcacattatcttgagtagaaagtctgcagtgatttctgctatacag
gaggagcaagttgtaagaagcttctctgaaatccagcctgggatgctgttgactggttat
gtgaggaatgtgatgccttttggagtgtttgtggagtttccttttggtgtgacaggactg
gcacccaaagtgagcatgagtgacaagtttgtgacagacaccaaggaccactttgtggtg
ggacagactgtgattgcaaaggtgatgagcattgatgaggagaagcagcgtgtgctcctc
aatctgaaggtgtctgagtgcagctcaggagattctgctgcagagagctttggcctcctg
aatcagtacttcaaggagctgaaagaaatcagggacttgctgaaaagaggagagcccagc
atttgtgagttggtgcctgggaagagggtgcatctggtcgtgcaggatgtgagggaggat
ggctcagcactgttcagtggcagctctgtcacaggcttgactgtaactgccacccgctac
catttgggagacaaaaatattgctcgtggtgagaaaaggaaggcattgattcttcacgtg
gatgccctcacatctgaagtgtttgtttctcttcgggaagaactgttaaagcaaaggccc
aagcaacggctccgagagaactcgcagcactctgtggtggtgcagcacatcacagagcac
tttgccgtcgcgtctctgccggaaacaggccagctggcagccgtgcccatcgcctgccac
ctcaacgacaccttccgcttcgactcggagaaactcagggtgggacagacaatctctgcc
accttaaaagcagtgaaggagaacaagcacggggtcttgttggcagtacagggcccagcc
aagaagaatgtttttgtgagggtgcggaacgagtcagagacagcactggaggagatgctt
cctgctctgaaacactcgctgtccccgggggatgttgttaccggtactgtcaaatccatc
aaacccacccacgtcactgttgctattgatgataagctgacaggttcaatccatgcatcc
cggatcctggatgaagtgcccataggctcttttccaacttctactctgaaagctggacag
aaagtgactgctcgagtcattggaggcagagatgtgaatactcacaggtgcctgccaatc
acccatccacacttcacacaatccattccagagctcagcattcgaccaagtgaaaaagaa
ggggaattcacagcaatgctgaaccttaaagaagaaggttccctcaagaaacttggactc
tacgatgttggacagacagtcacctgttttgtaaagaagtataacatgctcaaaaactgg
ctggaggtagaagttgcccctgacattcgaggaagagttcctcacctgctgctgtctctg
aacaccaaggtcttaaaacatccagaaaagagctttaaaagtggccaggcaatatcagct
acagtgactggaacagatgccactgaaacatgcctctacttgtcactcacaggaattcag
tcactggagcaggataccatctctgtaggcatggtaacaaaggtgactccacatgttggc
ttgaccattgcactgccaggtgggaaggctggcaaagtcagcctctttcacctgaatgat
acttacacagaggatcctctggggagcttcaaagttggcaagattgtcaggtgctacatc
ctgtccaatgagaacggtaaaatccagttgtctctccgtcaatcccggctaaatccaaag
ataaacagcaaagtggaggatattgaaataacaagtattaaggatgttaaaaaaggccag
ctggtgagaggctatgtcaaatcaatcactccatcaggtgtattctttggattgtccact
tctctcctgggccgaatcttgttccagaatgtttccccatactttgtacagaaacattcc
ttatatgaaaagtacctgcctgaaggaaaactgctcactgccaaagtacttggggtaaat
agaaaagaaaaacgtattgagctctctctcctgcctgaggacactgggatgccaagtgtc
ttgcctgaatccctaggcctaccacaatatggagcagaggaggagaaaagagaggcagat
gatgagaagaaaagagaagagcctaagctgaagaaaaaaaggagaagaggaaatgatgaa
agtagtcaggaggcaaagccaaagaagaggaagatctgcccagcagatgaaaatgacagt
ggaattgaggtgtattaccgtgaggaggaagaggatgaccaggaggaagaggcagctaaa
aagaaatctacggtaaggaagcctggtgaagctcccaggctgcaagtttccatgggcttc
acctgggatgaagacaatacaatggatatacctgtgctggatcagaaggaagagagctca
gagagcgaggaggaggaggatgtgcagtccaagctgaagaaacgaacaaagaaggagaag
gagctggagaagcagaagaaggagaaggagctttgcaaagtagaggcggctctcatggac
ccgagccggcagccccagtccgcagatgactttgaccgcctggtcctgggcagtcccaac
agctccatcctctggctgcagtacatggctttccacctccaggctacagagattgagaag
gccagagctgtggcagagagagcacttaaaacaatcagtttcagggaagaacaggagaag
ctgaatgtctgggtagctctgctgaacttggagaacatgtatggtactgaggagacactg
atgaaggtctttgagagagcagttcaatacaatgagcctctgaaagtcttccagcatctg
tgtgacatctatgccagttctgagaagtacaagcaagcagaagaattgtaccacacaatg
ctgaagcgttttcgtcaggagaaatccgtgtggctgaaatacgcctctttcctcctgaag
caaggccaggctgaggctactcacaggcttctggagcgtgctctcaaggctctgcccaca
aaagaacatgtggatgtcatttcaaggtttgcacagctggagttccattctggggacaca
gaacatgccaaggccctctttgagagcaccctcagcagctatcccaagaggacagacatt
tggtccatctacatggacatcatgatcaagcatggcagccagaaggaaatccgagacatc
tttgagagggtcatacacctgagcttggcaccaaagaagatgaaattcttcttcaaacgc
tacctggattatgagaagaaatttggtacagaacagagtgtcctggctgttaaaagagca
gcacttgagtatgtggagaccaagagttcccttgctgacacctaa
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