Molothrus aeneus (bronzed cowbird): 136567414
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Entry
136567414 CDS
T11621
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
maen
Molothrus aeneus (bronzed cowbird)
Pathway
maen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
maen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136567414 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
maen03041
]
136567414 (DDX42)
Enzymes [BR:
maen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136567414 (DDX42)
Spliceosome [BR:
maen03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
136567414 (DDX42)
Complex B
136567414 (DDX42)
Complex C
U2 SnRNP specific factors
136567414 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SBSN_GxHH_rpt
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
136567414
NCBI-ProteinID:
XP_066423115
LinkDB
All DBs
Position
28:4404727..4421130
Genome browser
AA seq
1147 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPAFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPEGPIAATAAAKGVPGFSSTGSLSSVPP
FPSAGAQGFNSTNTSASSREGGGGIVRERYNDSRNSRHGEAPRRTEGGAGGRGEGSAGGR
GEGAGGRGEGAGGRGEGAGGRFNEGQRFNDGQRFNEGQRFNEGQRFNEGQRFNDGQRFNE
GQRFNDGQRFTEGQRFTEGQRFTEGQRFTEGQRFNEGQRFNDGQRFNDGQRFNDGQRFND
GQRFNDGQRFNEGQRFNDGQRFNDGQRFNEGQRFNDGQRFNDGQRFNDGQRFNDGQRFND
GQRFNEGQRFNDGQRFNEGQRFNDGQRFTEGQRYDGQRYTEGQRHGEGGGRHGDPSRHSD
GRHGDAHRHGEGRHFSDSPGGNRNSGDSRNSESRNGENRKEANSRDNKTDGFAVPEPPKR
KKSRWDS
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtaccaagagaggctttgggtttggtggctttgcc
atcacacctggcaagaaggaggagcccaagctgtctcagcagtcccacagtgcttttggc
accgccggctcctcggcagcatttgcgaagtcggggcctcctcagctgccttccttctac
aaaattgggtcaaagagagccaattttgatgaggagaatgcgtactttgaggatgaagag
gaggattccagcaatgtggaattgccctacattcctgcagagaattcccccactcggcag
cagttccattccaaatcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagactggaagataaagacaaggaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcgtat
tttcgctacatggcagagaaccccactgctggtgtggtgcaggaggaggaggaggataac
ctggagtatgacagcgatgggaatccgattgcaccctccaaaaaaatcatcgatcctctt
ccacctattgaccattcagagattgaatacccagcatttgagaaaaatttctatgatgag
catgaggagatcaccagcctgaccccgcagcaggtggtggagctacggcacaagctgaat
ctccgggtctccggggctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcagattaggaaatctgagtatacccaacccactccaatacag
tgtcagggtgttccagttgcactaagtggcagagacatgattgggatagccaagactgga
agtgggaaaacagctgctttcatctggccaatgctgatccacatcatggatcagaaggag
ctggaaccaggggatggtcccattgcagtgattgtctgcccaaccagggagctctgccag
cagatccactcggagtgcaagcgctttggcaaggcctacaacctgcgctcggtggccgtg
tacggaggagggagcatgtgggagcaagccaaggccctgcaggagggggcagagattgtg
gtctgcacaccaggtcgcttgattgatcatgtgaaaaagaaagctacaaacctgcagaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatggggtttgaataccag
gtcagatcaatcgcgagccacgtacgtcctgacagacagaccctcttgttcagtgccacg
ttccgtaagaagattgagaagttggctcgggatatcctgatcgacccaattcgggttgtg
caaggagacattggagaggcaaatgaagatgtcactcagattgtggagattttcccctct
gggcccagcaagtggaactggctgacacggcgcctggtggagttcacgtcctcggggagc
gtcctcctcttcgtcaccaagaaagccaacgcagaggagctggccaataacctcaagcag
gaggatcataacctggggctgctgcatggggacatggaccagagcgagaggaataaagtc
atttcggaatttaagaaaaaggggatccccatcctggtagctactgatgtggcagctcga
ggcttggacatcccttccatcaagactgtcatcaactacgacgtggctcgggacatcgac
acccacacgcaccggatcggccgcaccggccgcgcgggggagaagggggtggcctacacc
ctgctgacccccaaggacagcaacttcgctggtgacctggtcaggaacctggagggtgcc
aaccagcacgtctccaaagagctgctggacttggcaatgcagaacccgtggttccggaaa
tcccggtttaaaggaggaaagggcaagaagctgaatattggtggtggtggcctggggtac
cgtgagcgccccgggctgggctcagaaaatactgaccgtggaaacaacaacagtgtgatg
agcaactatgaggcctacaagccatccacaggggccatgggggacaggctgacagcaatg
aaagcagctttccagtcccagtacaagagtcactttgttgctgcaagtttaaataaccaa
aagactgggagctctgccgctggcgccagcggctggaccagcgccgggagcctgaactcc
gtcccgacgagttcagcgcagcagaacgccgccaatcccgagggccccatcgcagccacg
gcagcagcgaagggagtgccgggcttcagcagcacgggcagcctgagcagcgtgcccccc
ttcccgagcgccggggcacagggcttcaacagcacaaacaccagcgccagcagccgggag
ggcggcggcggcatcgtcagagaacgctacaacgacagccggaacagtcggcacggcgag
gccccgcggcgcacagagggcggcgctggtggccggggggagggcagtgctggtggccga
ggggagggcgctggtggccgaggggagggcgctggtggccgaggggagggcgctggtggc
cgctttaatgagggccagcgcttcaatgatggtcagcgcttcaatgagggccagcgcttc
aatgagggccagcgctttaacgaaggccagcgtttcaatgatggtcagcgctttaacgag
ggccagcgctttaacgatggtcagcgtttcaccgaaggccaacgcttcaccgaaggccaa
cgcttcaccgaaggccaacgcttcaccgaaggccaacgcttcaacgaaggccaacgcttc
aacgatggccagcgcttcaacgatggccagcgcttcaacgatggccagcgcttcaacgat
ggccagcgcttcaacgatggccagcgctttaacgagggccagcgcttcaacgatggccag
cgcttcaacgatggccagcgctttaatgagggccagcgctttaatgatggtcagcgcttt
aacgatggtcagcgctttaacgatggtcagcgctttaacgatggtcagcgctttaacgat
ggtcagcgctttaacgagggccagcgcttcaacgatggccagcgctttaacgagggccag
cgcttcaatgatggtcagcgtttcactgagggccagcgctacgatggccagcgttacacc
gagggccagcgccacggcgaaggcggcggccggcacggcgacccctcccggcacagcgac
ggccgccacggcgatgcccatcgccacggcgagggccggcacttcagcgactcgccgggc
ggcaaccgcaacagcggtgacagcaggaacagcgagagcaggaacggagagaacaggaag
gaggccaacagccgagacaacaagacagatggctttgctgtcccagagcccccaaaacgg
aagaagagccggtgggacagttaa
DBGET
integrated database retrieval system
