Microvirgula aerodenitrificans: DAI18_00525
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Entry
DAI18_00525 CDS
T09834
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
maer
Microvirgula aerodenitrificans
Brite
KEGG Orthology (KO) [BR:
maer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maer03019
]
DAI18_00525 (hrpA)
Enzymes [BR:
maer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DAI18_00525 (hrpA)
Messenger RNA biogenesis [BR:
maer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DAI18_00525 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_23
T2SSE
AAA_25
NACHT
PhoH
AAA_30
FtsK_SpoIIIE
SRP54
Motif
Other DBs
NCBI-ProteinID:
AVY92699
UniProt:
A0A2S0P6E0
LinkDB
All DBs
Position
106863..110738
Genome browser
AA seq
1291 aa
AA seq
DB search
MSRELLDPIDRLIADCTARDRQALTRRRRELADRLKAGKPAERLAAQLQAEAGRSAARVA
ERRARLPEPEFDPILPVNQKKDTLLAAIDKHQVVIVCGETGSGKTTQIPKLCLALGRGTR
GLIGHTQPRRLAARAVASRIADELHSSIGELVGFKVRFTDRTSDASFIKLMTDGILLAET
QTDRFLSAYDTIIIDEAHERSLNIDFLLGFLKQLLPRRPDLKVIITSATIDADRFSRHFN
GAPVIEVSGRTYPVEIRYRPLTQRDEDDREREMEDAIVDAVDEIARLGAGDILVFLPGER
EIRDTAEALRKARITTRYDVLPLFARLSNEEQNRIFKPGGGRRIVLATNVAETSLTVPGI
KYVIDTGLARVKRYTPRAKVEQLLVEKISQAAARQRAGRCGRVEAGVAVRLYDEDDFNAR
PAFTDPEIIRSNLAAVILRMAALRLGAVADFPFLEPPSSRLIADGYDMLHELGAVTEQGE
LTPLGKELARIPVDPKIGRMLLAARDFHCLREMLILVSALSIQDPRERPFDARDAAERAQ
ARFADDKSDFQSYLALWDFFDDALKHKKSNKQLVQLCHDHFLSHLRMREWRELHGQLSQI
AGDLDLRANDTPATFEQLHKALLTGLLGNIGMKSMDGDDYLGARGIHFHIFPGSGLRKAR
PKWLIAGELTETSRLYARSVAVIQPEWVESLALHLVKRHYFEPHWEKTRGEVVASERVTL
YGLNIVPRRMVSYGRIDPAEARQIFIREALANGQLNSNAPFFRHNQRLIREVEQLEHKAR
RQDVLVDEDTLVAFYDERLPAELCDTRSFDAWRESAERDDPQVLFLTREYLMQHAAENIT
EEQFPPTLDSDDGPLKLKYRFEPNHPLDGVTVDVPLAVLNRLPGARLEWLVPGMIREKLT
LLIKSLPKQSRRACVPVPDFVTRFLASQPDQDAPILPQLAAFVRKATGLTLEATDFDPSA
LPTYCQMNIRVLDDGRQELGLGRDLLALQKQFGAAAQLTFRDSSAEFERDDVQAWDVGDL
PESIKFARGRQQLEGFPALCCEDERIALRLFDTAQAAESAHRRGVICLLQRELKEHMKQM
QKGLPGFTQIALQLRGVANADALLDDAIQCICDRAFIGEDALPRSKKAFDEQKKRARTRL
PAVTQAVTQMLNAIAAEYPKTVQMAERHKLGPKLAIELRELVYPGFLLATPWSQLPQLPR
YLKAKQLRMEKYAANSQRDGQRGAEVTGLWNRWADKVAELDARDGAPERLRDYRWQIEEL
RVSLFAQELKTPYPVSVKRLEKSWQELKLGS
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcgaactgctcgacccgatcgaccgactgatagccgattgcaccgcccgcgac
cgccaggcgctgacccgtcgtcgccgtgaactcgccgaccggctgaaggccggcaagccc
gccgaacgcctggccgcgcagctgcaggccgaggccggacgctcggctgcccgcgtcgcc
gaacgccgtgcccggctgccggaacccgagttcgacccgatcctgccggtcaaccagaag
aaggacacgctgcttgccgccatcgacaagcaccaggtagtcatcgtctgcggcgaaacc
ggctccggcaagaccacgcagattcccaagctgtgcctggcactcggccgcggcacgcgc
gggctgatcggccatacccagccacggcgcctggccgcacgtgccgttgccagccgcatc
gccgacgaacttcactccagcatcggcgagctggtcggcttcaaggtccgcttcaccgac
cgcacctcggacgccagcttcatcaagctgatgaccgacggcatcctgctggccgaaacc
cagaccgaccgcttcctgtccgcctatgacaccatcatcatcgacgaagcgcacgagcgc
tcgctgaacatcgacttcctgctcggtttcctcaagcagttgctgccgcgtcgcccggac
ctgaaagtgatcatcacctcggccaccatcgacgccgaccgcttcagccgccatttcaat
ggcgccccggtcatcgaggtgtccggccgcacctatccggtcgagatccgctaccggccg
ctgacccagcgcgacgaggacgatcgcgaacgcgagatggaggacgccatcgtcgacgcc
gtcgacgagatcgcccgcctcggcgccggcgacattctggtgttcctgcccggcgagcgc
gaaatccgcgataccgccgaggcgctgcgcaaggcgcgcatcactacccgctacgacgtg
ctgccgctgttcgcccgcctcagcaacgaagaacagaaccgcattttcaagcccggcggt
ggccgtcgcatcgtgctggccaccaatgtggcggaaacctcgctgaccgtgcccggcatc
aagtacgtgatcgacaccggtctggcgcgggtcaagcgctataccccgcgcgccaaggtc
gaacagctgctggtcgaaaaaatctcgcaggccgcggcccgccagcgcgccggtcgctgc
ggccgggtagaggccggggtggcggtgcggctgtacgacgaggacgacttcaacgcccgc
ccggcattcaccgacccggaaatcatccgctcgaacctggcggcagtcattctgcgcatg
gccgcgctgcgactcggcgcggtggccgacttcccgttcctggaaccgccgtcgtcgcga
ctgatcgccgatggttacgacatgctgcacgagctgggggcggtgaccgaacagggcgag
ctgaccccgctgggcaaggaactggcacgcatcccggtcgacccgaagatcggccgcatg
ctgctggctgcgcgcgacttccactgcctgcgcgaaatgctgatcctggtcagcgcgctg
tcgatccaggacccgcgcgagcggccgttcgacgcccgcgacgccgccgagcgcgcgcag
gcccgctttgccgacgacaagtccgatttccagagctatctggcgctgtgggacttcttc
gacgacgccctgaaacacaagaaatcgaacaagcagctggtacagctgtgccatgaccac
ttcctgtcgcatctgcgcatgcgcgaatggcgcgagctgcacggccagctgtcgcagatc
gccggcgatctcgacctgcgcgccaacgataccccggccaccttcgagcagttgcacaag
gcgctgctgaccggcctgctcggcaatatcggcatgaaatccatggacggcgacgattac
ctcggcgcccggggcatccactttcacattttccccggttccggcctgcgcaaggccagg
ccgaaatggctgatcgccggcgaactgaccgaaaccagccgcctgtatgcgcgctcggtc
gccgtgatccagccggaatgggtcgaatcactggccctgcacctggtcaagcgccactac
ttcgagccgcactgggaaaaaacccgcggcgaagtggtcgccagcgaacgcgtgaccctg
tacggcctcaatatcgtgccgcgccgcatggtcagctatggccgcatcgacccggccgaa
gcccggcagatctttatccgcgaagcactggccaatggccagttgaacagcaatgcgccg
ttcttccgccacaaccagcgcctgatccgcgaggtcgagcaactggagcacaaggcgcgc
cgccaggatgtgctggtcgacgaggacacgctggtcgcgttctacgacgaacggctgccg
gccgaactgtgcgacacgcgcagcttcgatgcctggcgcgaaagtgccgagcgcgacgac
ccgcaggttctgttcctgacccgcgaatacctgatgcagcacgcggcggagaacattacc
gaagaacagtttccgccgacgctggacagcgacgacggcccgctgaagctcaagtaccgc
ttcgagcccaaccacccgctcgacggcgtgaccgtcgacgtgccgctggcggtgctgaac
cggctgcccggcgcacggctggaatggctggtgccgggcatgatccgcgaaaaactcacg
ctgctgatcaagtcactgccgaagcagagccgccgtgcctgcgtgccggtgccggacttc
gtcacccgcttccttgcttctcagccggatcaggacgccccgatcctgccgcaactggcg
gcctttgtccgcaaggcgaccggcctgacactggaagcaaccgacttcgatccgtccgcg
ctgccgacgtactgccagatgaatatccgcgtgctcgacgacggtcgtcaggagctgggg
ctgggccgcgatctgctggcgctgcagaagcagttcggcgcggcagcgcaactgaccttc
cgtgactcgtcggccgagttcgagcgcgacgacgtccaggcctgggatgtcggcgatctg
ccggaaagcatcaagttcgcccgaggtcgccagcaactggaaggcttcccggcgctgtgc
tgcgaggacgagcgcattgccctgcgcctgttcgacaccgcgcaggccgccgagagcgcc
catcggcgcggcgtgatctgcctgctgcagcgtgagctgaaagagcacatgaagcagatg
cagaagggactgcccggcttcacccagattgccctgcaactgcgtggcgtcgccaatgcc
gatgcgctgctggatgatgcgatccagtgcatctgtgaccgcgcctttatcggcgaggat
gcgctgccgcgcagcaagaaggccttcgacgagcagaagaagcgcgcccgcacccggctg
ccggccgtgacccaggcggtcacgcagatgctgaatgccattgccgccgagtatccaaag
acggtacagatggccgaacggcacaagctcggtccgaaactggccatcgagctgcgggaa
ctggtctacccgggtttcctgctggcgacaccgtggtcgcaactgccgcagctgccgcgc
tatctgaaggccaagcagttgcgcatggagaagtatgccgccaacagccagcgcgacggc
cagcgcggcgcggaagtcaccggcctgtggaaccgctgggccgacaaggttgccgagctc
gatgcgcgcgacggcgcgccggagcggctgcgcgactaccgctggcagatcgaggagctg
cgcgtgtcgctgttcgcccaggagctgaaaacgccgtacccggtatcggtcaagcggctg
gagaaaagctggcaggaactgaaactcggcagctga
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