Mariprofundus aestuarium: Ga0123461_2023
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Entry
Ga0123461_2023 CDS
T05212
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
maes
Mariprofundus aestuarium
Pathway
maes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ga0123461_2023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maes03019
]
Ga0123461_2023
Enzymes [BR:
maes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Ga0123461_2023
Messenger RNA biogenesis [BR:
maes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Ga0123461_2023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
P-loop_SecA
AAA_22
Cas3-like_C_2
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
ATX80429
UniProt:
A0A2K8L2H1
LinkDB
All DBs
Position
complement(2061353..2062627)
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AA seq
424 aa
AA seq
DB search
MTFDDLGLSAELLRAVSDQGYTTPTPVQEKSIPVVIAGHDVLAGAQTGTGKTAGFTLPML
QLMQKTHPERHRKCVIRALVLTPTRELAAQVGESIATYGKYLPIRSTVVFGGVGINPQIQ
KLNRGVDILVATPGRLLDLIGQRKCDLSHVEFFVLDEADRMLDMGFIHDIRKVLKLLPQK
RQNLLFSATFSEEIKQLASGFLRSPVFVEVARNETAHQVTQVVHPVTKSRKRDLLSHLIK
EGDWKQVLVFTKTKHGANRLTTQLESDGIQAAAIHGNKSQTARTKALAAFKAGDVRVLVA
TDIAARGLDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGNTGESLSLVSADEKKLLADIE
RLIKKAIPKVVIPGFEPGENEPTELPKQQQRRKPDHRRHDPSSPRKPHSNRSRRPGKGAR
AAAK
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgatgatctcggcctttcagccgaactgcttcgtgctgtgagcgatcagggc
tataccaccccgacgcctgtacaggaaaaatctatcccggtcgtaattgcaggacacgat
gtgcttgccggcgctcaaaccggaacaggaaaaacagcaggttttaccctgccaatgctg
cagctgatgcagaaaacacatccggagcgtcacagaaagtgcgtcattcgcgccctggtg
ctgacaccgacgcgtgagctggctgcacaggtaggtgagagcattgccacttacggcaaa
taccttcctatacgctccaccgtggtattcggtggcgtgggcatcaacccgcagattcag
aaactgaatcgcggcgttgatatcctcgttgcaacaccgggtcgcctgctcgacctgatc
ggccagcgtaagtgtgaccttagccatgttgagttctttgtgcttgatgaggctgaccgc
atgctcgacatgggatttatccatgatatccgcaaggtgctgaagctgttgccgcaaaag
cgtcagaacctgcttttctccgccaccttctcagaggagatcaaacagctggccagcggt
ttcctgcgctcacctgtgtttgttgaggtggcacgcaacgagactgcgcatcaggtgaca
caggttgtgcatccggtcaccaagtccagaaaacgggatctgctctcccacctgattaaa
gagggtgactggaagcaggtgctggtattcaccaaaaccaaacatggtgccaaccgactg
accacacagctggagagtgatggtattcaggctgccgcgattcatggcaacaagagtcag
acagcgcgcaccaaggcacttgctgcttttaaagccggcgatgtccgtgtgctggtggca
accgatattgccgcccgtggccttgatatcgatcagctgccgcatgtggtgaactttgag
ctgcctaatgtttccgaggattatgtgcaccgcatcggccgtaccggccgcgcaggtaac
acaggcgaatcgttatcactggtttctgcggatgagaagaagttgctggccgatatcgag
aggctgatcaaaaaggcgattccgaaggtggttatccctggttttgaaccgggagagaat
gagccgacagaattgccaaaacagcagcaacgcagaaagcccgatcatcgcaggcacgat
ccaagctcaccgcgcaaaccacacagcaatcgctctcgccgcccaggaaaaggtgcgcgc
gctgctgcaaagtag
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