KEGG   Mycobacterium tuberculosis variant africanum: MAF_33070
Entry
MAF_33070         CDS       T01575                                 
Symbol
lhr
Name
(GenBank) putative ATP-dependent helicase LHR (large helicase-related protein)
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
maf  Mycobacterium tuberculosis variant africanum
Brite
KEGG Orthology (KO) [BR:maf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:maf03400]
    MAF_33070 (lhr)
Enzymes [BR:maf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     MAF_33070 (lhr)
    5.6.2.6  RNA 3'-5' helicase
     MAF_33070 (lhr)
DNA repair and recombination proteins [BR:maf03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    MAF_33070 (lhr)
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr WH3_Lhr WH4_Lhr WH2_Lhr DEAD Helicase_C ResIII AAA_22 AAA_25 PhoH Cas3-like_C_2 DUF6406 GST_C_2
Other DBs
NCBI-ProteinID: CCC28377
LinkDB
Position
3657200..3661741
AA seq 1513 aa
MRFAQPSALSRFSALTRDWFTSTFAAPTAAQASAWAAIADGDNTLVIAPTGSGKTLAAFL
WALDSLAGSEPMSERPAATRVLYVSPLKALAVDVERNLRTPLAGLTRLAERQGLPAPQIR
VGVRSGDTPPALRRQLVSQPPDVLITTPESLFLMLTSAARQTLTGVQTVIIDEIHAIAAT
KRGAHLALSLERLDDLSSRRRAQRIGLSATVRPPEELARFLSGQSPTTIVAPPAAKTVEL
SVQVPVPDMANLTDNTIWPDVEARLVDLIESHNSTIVFANSRRLAERLTARLNEIHAARC
GIELAPDTNQQVAGGAPAHIMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKA
VVATSSLELGIDMGAVDLVIQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLG
CAVSVQRMLAGEIETMRVPANPLDILAQHTVAAAALEPLDADAWFDTVRRAAPFATLPRS
LFEATLDLLSGKYPSTEFAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVY
LATERPSRVGELDEEMVYESRPGDVISLGATSWRITEITHDRVLVIPAPGQPARLPFWRG
DDAGRPAELGAALGALTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVP
TDSTLLVERFRDELGDWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVV
RLPDTVSAGEDSPPGAELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPG
RRSPLWQQRQRAARLLEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRVA
EAETAKPSPFAASLLFGYVGAFMYEGDTPLAERRAAALALDGTLLAELLGRVELRELLDP
DVIAATSRQLQHLAADRVARDAEGVADLLRLLGPLTEDEIAARAGAPEVSGWLDGLRAAK
RALVVSFAGRSWWVAVEDMGRLRDGVGAAVPVGLPASFTEAVADPLGELLGRYARTHTPF
TTAAAAARFGLGLRVTADVLGRLASDGRLVRGEFVAAAEGSAGGEQWCDAEVLRILRRRS
LAALRAQAEPVSTAAYGRFLPAWQHVSAGNSGIDGLAAVIDQLAGVRIPASAIEPLVLAP
RIRDYSPAMLDELLASGDVTWSGAGSISGSDGWIALHPADSAPMTLAEPAEIDFTDAHRA
ILASLGTGGAYFFRQLTHDGLTEAELKAALWELIWAGRVTGDTFAPVRAVLGGAGTRKRA
APAHGGHRPPRLSRYRLTHAQARNADPTVAGRWSALPLPEPDSTLRAHYQAELLLNRHGV
LTKDAVAAEGVAGGFATLYKVLSAFEDAGRCQRGYFIESLGGAQFAVASTVDRLRSYLDG
VDPEQPDYHAVVLAAADPANPYGAALPWPASSADGTARPGRKAGALVVLVDGELAWFLER
GGRSLLTFTDDPEANHAAAIGLADLVTAGRVASILVERADGMPVLQPGGRASAALTALLA
AGFVRTPRGLRRR
NT seq 4542 nt   +upstreamnt  +downstreamnt
gtgaggttcgcgcagccttcagcactgagccgattcagcgcgctcacccgagactggttc
accagcactttcgccgcgcccaccgccgcccaggccagcgcctgggcggccatcgcagac
ggcgacaacacgctggtcatcgctcccaccggatccgggaagaccctggcggcgttcctg
tgggccctggatagcttggccggttcggaacctatgtccgagcggccggcggccacccgc
gtgctgtatgtgtcgccgctcaaagcgttggccgtcgacgtcgagcgcaacctgcgcact
ccgctggccggactgacccgactcgccgaacgccagggtctgcccgcgccccagatcagg
gtgggcgtccgttcgggcgacaccccgcccgcacttcgccgccagctcgtcagccagccg
cccgacgtgctgatcaccaccccggagtcattgtttttgatgctcacttcggccgcacgc
caaactctgaccggtgtgcagaccgtcatcatcgacgaaattcatgccatcgccgccacc
aagcgcggcgcacacctggcactatccctagaacggctcgacgacctgtctagccggcga
cgggcgcagcgcatcgggctgtcggcgaccgtacgtcctcccgaggaactcgcaaggttc
ctgtccggacagtccccgacgaccattgtggcgcccccggccgccaagaccgttgagctg
tccgtgcaggtgccggtgcccgacatggccaacttgaccgacaacaccatctggccggat
gtggaggctcggctggtcgacctgatcgaatcacacaactcgaccatcgtgttcgccaat
tcgcgacgattggccgagcgacttaccgcacggctcaacgaaattcacgccgcgcgctgc
gggattgagctcgcgccagacaccaaccagcaggttgccggcggcgccccggcgcacatc
atgggctcgggccagacgttcggagcgccgccggtgctggcccgcgcccaccatggctcg
atcagcaaggagcagcgcgccgttgtcgaagaggacctcaaacgcgggcaactcaaagcg
gtggtggcgacgtccagcctggagctgggcatcgacatgggcgcggtcgatctggtgatc
caagtacaggcaccaccatcggtggccagcgggctgcagcgcattggccgggccggtcat
caggtcggcgagatttcgcggggggtgctgtttcccaagcatcgcaccgacctactcggc
tgcgcggtcagcgtgcagcgcatgcttgccggtgagatcgagaccatgcgggtgccggcc
aacccactcgacattctggcccagcacacggtggcggcggctgcgctggaaccgttggat
gccgacgcgtggttcgacaccgtgcggcgggccgccccgttcgcgaccctgccgcgtagc
ctgttcgaggccaccctggacctgctgtccggcaagtacccatccaccgagttcgctgag
ctgcggccgcggctggtgtatgaccgcgataccggcacgctgaccgcgcgacccggagcc
cagcgactggccgtcacctccggcggcgccattcccgatcgcgggttgttcgccgtctac
ctcgctaccgagcggccgtcgcgggtaggcgaactcgacgaggaaatggtttacgagtcc
cgccccggtgacgtgatctcgctgggtgccaccagctggcgaatcaccgagatcacccac
gaccgggtgctggtgatccccgcgccgggccagccggcccgattgccgttctggcgcgga
gacgatgccggccgccccgccgagctcggcgccgcactcggcgccctcaccggcgagctg
gccgccctggaccgtacggcattcggcacacgttgtgcgggtttgggtttcgacgactat
gccaccgacaacctgtggcgactgctggacgaccaacgcaccgctaccgcagtggtaccc
accgacagcacattgttggtcgagcggtttcgtgacgagctgggcgattggcgggtgatc
ttgcattcgccgtatgggctgcgggtgcacggaccgctcgcgctcgcagtcggccggcgg
ctgcgcgaccgctatggcatcgacgagaagccgaccgcctccgacaacggcatagtggtg
cgcctaccggacaccgtgtccgctggcgaagacagcccgccgggtgccgaactgttcgtt
ttcgacgccgacgagatcgacccgatcgtcaccaccgaagtggccggttcggcgctgttc
gcgtcacggttccgggaatcggcggcccgcgctctgctgctgccccgccggcaccccggc
cgccgctcgccgctgtggcagcagcggcagcgcgccgcccggctgttggaagtggcccgc
aaataccccgacttcccgattgtgctggagacggtccgcgagtgcctgcaggacgtctat
gacgtcccgatcttggtcgagctgatggcgcggatcgcccagcggcgggtgcgtgtcgcc
gaagccgagaccgccaaaccttcgccatttgcggcatcgctgttgttcggctacgtcggc
gccttcatgtacgagggcgatacgccgctggccgaacggcgcgccgccgcgctcgcgctg
gacggcacgttgctggccgagctgctaggccgggtggagctgcgcgagctgctcgatcct
gacgtcatcgccgctaccagccgccagctccagcatctggcggccgaccgggtagcccgt
gacgccgaaggggttgccgatctgctgcggctgctgggtccgctcaccgaagacgagatc
gctgcccgggcgggcgcgcccgaggtcagcggctggctggacggcttacgcgccgccaaa
cgcgcgctcgtggtgtccttcgccggccgcagctggtgggttgccgtcgaggacatgggc
cggctgcgcgacggcgttggcgcggcggttccggtggggctgccggccagcttcaccgag
gcggtagccgacccgctgggcgaactactgggccgctacgcacgcacccacacaccgttc
accaccgctgcggccgcagcccggttcggtcttgggctgcgggtgaccgccgacgtgctg
ggccggctggccagcgatggccggctggtgcgcggcgaattcgtggccgcggccgaagga
tccgccggcggcgagcagtggtgtgacgccgaggtgttgcgaattctgcggcgccgctcg
ctggccgcactgagggcgcaggcagagccggtcagcaccgccgcctacggacgcttcctg
ccggcctggcagcacgtttccgcgggcaactcgggcatcgacgggctggccgcggtcatc
gatcagctcgccggcgtccggataccggcctcggcgatcgaaccgctggtgcttgcccca
cggatccgcgattactcgccggcgatgctcgacgagctgctcgcgagcggggacgtcacc
tggtcgggcgccgggtcgatctcaggcagtgacggctggatcgccctgcaccccgccgac
tcggcgcccatgacgctggcggagccggccgagatcgacttcaccgacgcccaccgggcg
atcttagccagcctgggcactggcggcgcgtacttcttccgccagttgacccacgacggc
ctgaccgaggcggaactcaaagccgctctgtgggaattgatttgggccggacgagtgacc
ggcgacacgttcgcaccggtacgcgcggtactcggcggggcgggcacccggaagcgtgct
gctcccgcacacggcgggcatcgaccgccgcgcctgagccgataccgcctcacgcacgcc
caggcccgcaacgctgacccgaccgtcgccgggcggtggtccgcgctgccgcttcccgaa
ccggactccacgctgcgcgcccattaccaagccgagctgctgttgaaccgccacggcgtg
ttgaccaaagacgcagttgctgccgagggtgtggcgggcgggttcgcgacgctctacaag
gtgctcagtgcgttcgaggatgccggcaggtgccagcgtggctacttcatcgagtcgttg
gggggcgctcagttcgccgtcgcctcgaccgtagaccggctgcgtagctacctcgacggt
gtcgaccccgaacagccggactaccacgcggtggtgctggccgctgccgacccggccaac
ccgtatggggcggcgttgccctggccagcgtcgagcgctgacggtaccgcccggccgggc
cgcaaagccggcgcactggtcgttctggtggacggcgagttggcctggttcctcgagcgc
ggcgggcggtcgttgctgacgttcaccgatgatcccgaggccaaccacgcggcggccatc
gggctggccgacctggtcaccgccgggcgcgtcgcgtcgattctggtcgagcgggccgac
ggcatgccggtgctgcagcccggcgggcgggcgtcggcggcactgacggcgctgctggca
gccggcttcgtccgcacacctcgcggtctgcggcggcggtaa

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