Paramagnetospirillum magneticum: amb2465
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Entry
amb2465 CDS
T00305
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mag
Paramagnetospirillum magneticum
Pathway
mag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
amb2465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mag03400
]
amb2465
Enzymes [BR:
mag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
amb2465
DNA repair and recombination proteins [BR:
mag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
amb2465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
NitrOD2
Motif
Other DBs
NCBI-ProteinID:
BAE51269
UniProt:
Q2W4F6
LinkDB
All DBs
Position
complement(2642039..2645443)
Genome browser
AA seq
1134 aa
AA seq
DB search
MLLAELAAGGCAQGGILHVARDEGRMARVAEALAFFAPDLQVLEFPGWDCVPYDRVSPHV
DMVARRIDTLARLADGVKGAFVVLTTVPGLAQRVPPREALASATLDARKGSRLSMDKLIG
FLSKNGYVRADTVMEPGEYAVRGGIVDLYPPGSAEPLRLDFFGDEIDSVRSFDPMSQRTT
GPMAGFVCRPVSEVGLDDASIARFRTNYREMFGVISGPDPLYEAISEGIKFNGMEHWLPL
FHDGLDTLFAYVPEAAVVLDHQSDEALTARHALVLEYFDARAGLAGAGLTESGMVYHPIL
PERLYLERAEWDRLLAARPVLHLSPFDAVEGDEGAVDAGGRLGRDFADMRARPGVNVYDC
VREHAEEQAKAGRRVVIAAWTQGSRDRLAGVLRDHGIKGIETVESWAEAQGLDKGRVAVA
VLGLDHGFATPDLAVITEQDILGDRLARPARKKKKGAQFIAEASALAEGDLVVHVEHGIG
RYDGLVALEVSGAPHDCLRVLYDGGDKLFVPVENIDVLTRFGSEQAGVSLDKLGGTAWQA
RKAKLKKRIRDIADQLIGIAAQRKMRQGEALVPAEGLYDEFCARFPFAETEDQMRAIEDS
IADLASGKPMDRLICGDVGFGKTEVAMRVAFVAALQGLQVAVVVPTTLLARQHYRTFKER
FSGLPVRVEQLSRLVTAKTASEVKAGVADGSVDVVVGTHALLAKGIGFKRLGLLIIDEEQ
HFGVAHKERLKQLKADVHVLTLTATPIPRTLQMALSGVKEMSVIATPPIDRLAVRTFVLP
YDPVVLRESILRERYRGGQVFYVCPRLADIDRVAERLAKLVPEVKTAVAHGRLAPADLEE
VMVAFGEKQYDVLLSTNIIESGIDMPSVNTLIIHRADMFGLGQLYQLRGRVGRGKTRGYA
YFTLPNDKVLSKAAEKRLQVMQALDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIREVGV
ELYQQLLEEAVAAAKGGQGGEAAEEWSPQIAVGTPVLIPETYVADLSVRLSLYRRIGSLA
DQAEIEALAAELIDRFGKLPPEVENLLEVVAIKALCKLAGIDKVDSGPKGAVVSLRGNVF
ANPAALVQFIARSAGSCKIRPDHKIVFLRAWEDPKQRIVGLRNVIGKLAELASA
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
ttgctgctggccgaactggcggccggtggctgcgcccagggcggcattttacatgtggcc
cgcgatgagggccgcatggcccgcgtggccgaggcgctggcattttttgcacccgatctt
caggtgctggaattccccggctgggattgcgtgccctatgaccgggtctcgccccatgtg
gacatggtggcgcggcgtatcgataccctggcgcgtctcgccgacggggtgaagggcgcc
ttcgtggtcctgaccaccgtccccggtctggcccagcgcgtgccgccgcgtgaggccctg
gcctcggcgacgctggatgcccgcaagggctcgcgtctgtccatggacaagctgatcggc
tttctgtccaagaacggctatgtgcgcgccgacaccgtgatggaaccgggcgaatacgcg
gtcagaggcggcatcgtcgacctgtatccgccgggctcggccgagcccctgcgcctggac
ttctttggcgacgagatcgactcggtgcggtccttcgaccccatgagccagcgtaccacc
gggccgatggcgggctttgtctgccgtccggtcagcgaagtgggcctggacgacgcgtcg
atcgcccgcttccgcaccaattaccgcgagatgttcggggtgatctcggggccggacccc
ctttacgaggccatctccgagggcatcaagttcaacggcatggagcactggctgccgcta
ttccatgacggtctcgacaccctgttcgcctatgtgcccgaggcggcggtggtgctggac
caccagtcggacgaggctctgaccgcccgtcatgccctggtgctggaatatttcgacgcc
cgcgccggtctggccggagcggggctgaccgaatccggcatggtctatcaccccatcctg
cccgagcgcctgtatctggagcgcgccgaatgggaccgcctgctggcggcgcgtccggtg
ctgcacctgtcgcccttcgacgcggtggagggagacgagggtgccgtcgatgccggcggg
cggctgggccgtgatttcgctgatatgcgggcccggccgggcgtcaacgtctacgactgc
gtgcgcgaacatgccgaggagcaggccaaggccgggcgccgggtggtgatcgccgcctgg
acccaggggtcccgcgaccgcctcgccggggtgctgcgcgatcacggcatcaagggcatc
gagacggtggagagctgggccgaggctcaaggattggacaagggccgggtcgccgttgcc
gttctcggcctcgaccatggcttcgccacccccgatctggcggtgatcaccgagcaggac
atcctgggcgaccgcctagcgcggcccgcccgcaagaagaagaagggcgcccaattcatc
gccgaggcctcggccctggccgaaggcgatctggtggtccacgtcgagcacggcatcggc
cgctatgacggcctcgttgccctggaagtctccggtgcgccccatgattgcctgcgggtg
ctctatgacggcggcgacaagctgttcgtgccggtggagaacatcgacgtcctgacccgt
ttcggctcggagcaggccggcgtgtcgctggacaagctgggcggcaccgcctggcaggcc
cgcaaggccaagctgaagaagcgcatcagggacatcgccgaccagctgatcggcatcgcc
gcccagcgcaagatgcgccagggcgaggccctggtgccggcggaagggctgtacgacgag
ttctgcgcccgtttcccctttgccgagaccgaagaccagatgcgggccatcgaggattcc
atcgccgatctggcctcgggcaagcccatggaccgcctgatctgtggcgatgtgggcttc
ggcaagaccgaggtggccatgcgcgtcgccttcgtggcggcgctccaggggttgcaggtg
gcggtggtggtgcccaccacgctgctggcccgccagcattaccgcaccttcaaggagcgc
ttctccggcctgccggtgcgggtcgagcaactgtcgcggctggtcaccgccaagaccgcc
tccgaggtcaaggccggggtggccgacggctcggttgacgtcgtggtcggcacccatgcg
ctgctggccaagggcatcggtttcaaacgcctgggcctgctgatcatcgacgaagagcag
catttcggtgtggctcacaaggagcgcctgaagcagctcaaagccgacgttcatgtgttg
acgctgaccgccacgcccattccccgcacgctgcagatggcgctgtcgggggtcaaggag
atgagcgtcatcgccacgccgcccatcgaccggctggcggtacgcaccttcgtgctgccc
tatgacccggtggtgctgcgcgaatccatcctgcgcgagcgctaccgcggcggacaggtg
ttctacgtctgcccgcgtctggccgacatcgaccgggtggccgagcgtctcgccaagctg
gtgcccgaggtcaagaccgccgtggcccatggccgtctggcgcccgccgacctggaagag
gtgatggtggcctttggcgagaagcagtacgacgtgctgctgtccaccaacatcatcgaa
tccggcatcgacatgccctcggtcaacaccttgatcatccaccgcgccgacatgttcggc
ctgggccagctctaccagcttcgcggccgggtggggcgcggcaagacccgcggctatgcc
tatttcaccctgcccaacgacaaggtgctgtccaaggcggcggaaaagcgcctgcaggtg
atgcaagccctcgacaccctgggcgccggcttccagttggccagccacgatctggacatc
cggggcgccggcaatctgctgggcgaggagcagtcggggcacatccgcgaggtcggcgtc
gagctgtaccagcaattgctggaagaggccgtcgccgccgccaagggcgggcaggggggc
gaggcggccgaggaatggtcgccgcagattgccgtgggcacgccggtgctgatccccgag
acctatgtggccgatctgtcggtgcgcctgtcgctttaccgccgcatcggctcgctggcc
gatcaggcggagatcgaggccctggccgccgaactgatcgaccgtttcggcaagctgccg
ccggaggtggaaaacctgctggaggtggtggccatcaaggcgctgtgcaagctggccggc
atcgacaaggtggattcggggccgaagggggcggtggtctccctgcgcggcaacgtcttc
gccaacccggccgccctggtgcagttcatcgcccgctcggccgggtcgtgcaagatcagg
cccgaccacaagatcgtcttcctgcgcgcctgggaggaccccaagcagcgcattgtcgga
ttgcgcaacgtcatcggcaaactggcggaattggcatcggcctga
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